Fig. 4. Output of the MultiRM web server.

The web server supports site prediction and result interpretation for twelve widely occurring RNA modifications (m⁶A, m¹A, m⁵C, m⁵U, m⁶Am, m⁷G, Ψ, I, Am, Cm, Gm, and Um) from RNA (or DNA) sequences. The figure shows the predicted RNA modification sites (upper panel) and the sequence components that contributed most to the positive predictions (lower panel) between the 101st and 150th nucleotides of an input sequence. The predicted probabilities, statistical significance, and attention scores of RNA modifications can all be downloaded as separate files from the web server. At the 123^rd nucleotide, multiple RNA modifications originated from U were predicted with a p-value less than 0.05, which, to some degree, reflected the associations among different RNA modifications unveiled previously (see Fig. 3).