. 2021 Jun 29;12:4011. doi: 10.1038/s41467-021-24313-3

Table 5.

List of base-resolution epi-transcriptome profiling data.

Full name	Short name	Original base	Site# (%)	Technology (or Database)	GEO Accession
N6-methyladenosine	m⁶A	A	65,178(40.08%)	m⁶A-CLIP-seq	GSE71154
				m⁶A-CLIP-seq	GSE86336
				miCLIP	GSE98623
				miCLIP	GSE63753
Pseudouridine	ψ	U	3137(1.93%)	ψ-seq	GSE60047
				Pseudo-seq	GSE58200
				CeU-Seq	GSE63655
				RBS-Seq	GSE90963
1-Methyladenosine	m¹A	A	16,380(10.07%)	miCLIP	GSE97908
				m¹A-MAP	GSE102040
				RBS-Seq	GSE90963
				m¹A-seq	GSE97419
				m¹A-seq	GSE70485
N6,2′-O-dimethyladenosine	m⁶Am	A	2447(1.5%)	miCLIP	GSE122948
					GSE78040
					GSE63753
2′-O-methyladenosine	Am	A	1591(0.98%)	Nm-seq	GSE90164
2′-O-methyladenosine	Am	A	1591(0.98%)	RMBase⁵⁴	–
2′-O-methylcytidine	Cm	C	1878(1.15%)	Nm-seq	GSE90164
2′-O-methylcytidine	Cm	C	1878(1.15%)	RMBase⁵⁴	–
2′-O-methylguanosine	Gm	G	1471(0.90%)	Nm-seq	GSE90164
2′-O-methylguanosine	Gm	G	1471(0.90%)	RMBase⁵⁴	–
2′-O-methyluridine	Um	U	2253(1.39%)	Nm-seq	GSE90164
2′-O-methyluridine	Um	U	2253(1.39%)	RMBase⁵⁴	–
5-Methylcytidine	m⁵C	C	12,936(7.95%)	BS-seq	GSE122260
7-Methylguanosine	m⁷G	G	1036(0.64%)	m⁷G-seq	GSE112276
5-Methyluridine	m⁵U	U	1696(1.04%)	miCLIP & FICC-seq	GSE109183
Inosine	I	A	52,618(32.36%)	RADAR⁵³	–

Am, Cm, Gm, and Um are sometimes combined together as 2′-O-methylation (or Nm).