Table 4.

Information for anchored physical map (LepMap3 step), after genome re-scaffolding (Lep-anchor3 step) and after removal of markers with discrepancies between genetic and physical maps (MareyMap step).

	Anchoring genetic map and physical map					Genome re-scaffolding						Marker refining
	Length (bp)	nMar	nCont	ACL	M/Mb	Length(bp)	NM	nCont	ACL	L(cM)	M/Mb	NMar	Mb/cM	M/Mb
1	59,220,137	1,337	129	459,071	22.6	42,924,012	1,323	124	343,392	147.3	30.8	1,296	0.29	30.2
2	42,658,310	1,054	91	468,773	24.7	36,396,255	1,046	88	413,594	131.8	28.7	1,032	0.28	28.4
3	47,587,809	1,015	85	559,857	21.3	33,319,822	1,006	80	416,498	136.6	30.2	978	0.24	29.4
4	42,630,187	920	83	513,617	21.6	27,129,084	899	73	366,609	106.9	33.1	885	0.25	32.6
5	32,366,427	891	86	376,354	27.5	27,692,037	872	78	350,532	142.5	31.5	811	0.19	29.3
6	34,539,569	864	80	431,745	25.0	26,866,643	860	77	348,917	114.0	32.0	832	0.24	31.0
7	36,891,773	849	87	424,043	23.0	28,334,760	836	77	367,984	133.8	29.5	795	0.21	28.1
8	36,615,909	784	86	425,766	21.4	27,361,452	769	82	333,676	119.3	28.1	756	0.23	27.6
9	32,328,246	804	65	497,358	24.9	25,679,769	802	63	407,615	105.1	31.2	765	0.24	29.8
10	35,518,751	768	88	403,622	21.6	25,170,845	762	84	299,653	113.7	30.3	748	0.22	29.7
11	37,595,336	780	99	379,751	20.7	26,846,769	769	93	288,675	126.2	28.6	732	0.21	27.3
12	37,197,923	763	80	464,974	20.5	25,840,656	752	77	335,593	98.5	29.1	731	0.26	28.3
13	34,656,556	665	50	693,131	19.2	23,154,965	658	48	482,395	98.7	28.4	637	0.24	27.5
14	33,597,656	668	76	442,074	19.9	26,091,242	665	74	352,584	109.5	25.5	637	0.24	24.4
15	36,416,189	644	66	551,760	17.7	22,903,974	632	59	388,203	113.1	27.6	601	0.20	26.2
16	26,721,177	630	58	460,710	23.6	21,637,702	618	52	416,110	108.0	28.6	602	0.20	27.8
17	30,251,165	616	79	382,926	20.4	21,095,432	610	75	277,572	103.3	28.9	563	0.20	26.7
18	24,300,965	587	62	391,951	24.2	19,718,726	577	57	345,943	87.8	29.3	561	0.23	28.5
19	36,478,108	584	75	486,375	16.0	21,051,312	575	70	296,497	108.0	27.3	562	0.20	26.7
20	24,034,263	534	62	387,649	22.2	20,166,255	530	62	325,262	105.7	26.3	497	0.19	24.6
21	24,720,343	530	78	316,928	21.4	19,202,697	514	70	270,461	98.3	26.8	490	0.20	25.5
ST	746,326,799	16,287	1,665	453,259	21.9	548,584,409	16,075	1,563	349,640	2,408.1	29.3	15,511	0.23	28.3
Not-anchored			1,738			61,859,804	212	1,840				776
Total	746,326,799	16,287	3,403	453,259	21.9	610,444,213	16,287	3,403				16,287

The physical (bp) and genetic (cM) length of each linkage group, number of markers (nMar), number of contigs (nCon), average contig length (ACL), marker density density (markers per megabase; M/Mb) and the ratio physical to genetic length (Mb/cM) for sex-average genetic-physical map are indicated.