Table 1.
Isolation details and GenBank accessions of Colletotrichum strains used in this study.
| Straina | Alternative code(s) | Species | Host | Origin | Year | GenBank no.b | |||
|---|---|---|---|---|---|---|---|---|---|
| ITS | GAPDH | TUB2 | APN/MAT1 | ||||||
| JA01 | Colletotrichum lupini | Lupinus albus | Switzerland, Melikon | 2018 | MT741840 | MW342515 | MW342537 | MW342559 | |
| JA02 | C. lupini | L. albus | Switzerland, Feldbach | 2019 | MW342494 | MW342516 | MW342538 | MW342560 | |
| JA03 | C. lupini | L. albus | Germany, Hattenhofen | 2019 | MW342495 | MW342517 | MW342539 | MW342561 | |
| JA04 | C. lupini | L. albus | Germany, Witzenhausen | 2018 | MW342496 | MW342518 | MW342540 | MW342562 | |
| JA05 | C. lupini | L. albus | Germany, Westerau | 2018 | MW342497 | MW342519 | MW342541 | MW342563 | |
| JA06 | C. lupini | L. albus | Russia, Saint Petersburg | 2018 | MW342498 | MW342520 | MW342542 | MW342564 | |
| JA07 | BRIP 63850, WAC 12994 | C. lupini | L. angustifolius | Australia, WA, Dongara | 2004 | MW342499 | MW342521 | MW342543 | MW342565 |
| JA08 | BRIP 63851, WAC 12995 | C. lupini | L. luteus | Australia, WA, Mingenew | 2004 | MW342500 | MW342522 | MW342544 | MW342566 |
| JA09 | BRIP 63857, WAC 13001 | C. lupini | L. albus | Australia, WA, Yandanooka | 2004 | MW342501 | MW342523 | MW342545 | MW342567 |
| JA10 | CMW 9930, SHK 788 | C. lupini | L. albus | South Africa, Bethlehem | 1994 | MW342502 | MW342524 | MW342546 | MW342568 |
| JA11 | CMW 9931, SHK 1033 | C. lupini | L. albus | South Africa, Stellenbosch | 1995 | MW342503 | MW342525 | MW342547 | MW342569 |
| JA12 | CMW 9933, SHK 2148 | C. lupini | L. albus | South Africa, Malmesbury | 1999 | MW342504 | MW342526 | MW342548 | MW342570 |
| JA13 | C. lupini | L. mutabilis | USA, Florida, Martin County | 2013 | MW342505 | MW342527 | MW342549 | MW342571 | |
| JA14 | C. lupini | L. hartwegii | USA, Florida, Martin County | 2013 | MW342506 | MW342528 | MW342550 | MW342572 | |
| JA15 | A-02 | C. lupini | L. albus | Chile, Cajón | 2009 | MW342507 | MW342529 | MW342551 | MW342573 |
| JA16 | A-10 | C. lupini | L. angustifolius | Chile, Cajón | 2009 | MW342508 | MW342530 | MW342552 | MW342574 |
| JA17 | A-24 | C. lupini | L. albus | Chile, Temuco | 2015 | MW342509 | MW342531 | MW342553 | MW342575 |
| JA18 | Lup1 | C. lupini | L. mutabilis | Ecuador, Juan Montalvo | 2007 | MW342510 | MW342532 | MW342554 | MW342576 |
| JA19 | Lup18 | C. lupini | L. mutabilis | Ecuador, Pujili | 2007 | MW342511 | MW342533 | MW342555 | MW342577 |
| JA20 | C. lupini | L. mutabilis | Peru, Carhuaz | 2019 | MW342512 | MW342534 | MW342556 | MW342578 | |
| JA21 | C. lupini | L. mutabilis | Peru, Carhuaz | 2019 | MW342513 | MW342535 | MW342557 | MW342579 | |
| JA22 | C. lupini | L. mutabilis | Peru, Carhuaz | 2019 | MW342514 | MW342536 | MW342558 | MW342580 | |
| CBS 109216 | BBA 63879 | C. lupini | L. mutabilis | Bolivia | JQ948156 | JQ948486 | JQ949807 | MW342581 | |
| CBS 109221 | BBA 70352, RB172 | C. lupini | L. albus | Germany | JQ948169 | JQ948499 | JQ949820 | MK478328 | |
| CBS 109225 | BBA 70884 | C. Lupini | L. albus | Ukraine | JQ948155 | JQ948485 | JQ949806 | MK478329 | |
| CBS 109226 | RB121, IMI 504884, HY09, BBA 71249 | C. lupini | L. albus | Canada, Nova Scotia | JQ948158 | JQ948488 | MK478189 | MK478316 | |
| CBS 509.97 | RB235, LARS 178 | C. lupini | L. albus | France | JQ948159 | JQ948489 | JQ949810 | MK478355 | |
| IMI 375715 | 96A4 | C. lupini | L. albus | Australia, WA, Perth | 1997 | JQ948161 | JQ948491 | JQ949812 | MK478341 |
| RB020 | PT30 | C. lupini | L. albus | Portugal, Azores | 1999 | MK463722 | KM252117 | MK478186 | MK478308 |
| RB042 | CBS 129944, CMG12 | C. lupini | Cinnamonium zeylanicum | Portugal, Lisbon | 1996 | MH865693 | JQ948508 | JQ949829 | MK478310 |
| RB116 | CSL 1294 | C. lupini | L. polyphyllus | UK, York | MK463723 | KM252194 | KM251944 | MK478313 | |
| RB122 | BBA 71310, C3 | C. lupini | L. luteus | Poland | MK463726 | MK463750 | MK478190 | MK478317 | |
| RB123 | IMI 504885, SHK788 | C. lupini | L. albus | South Africa, Bethlehem | 1994 | MK463727 | MK463751 | MK478191 | MK478318 |
| RB124 | BBA 70555 | C. lupini | L. albus | Chile | MK463728 | MK463752 | MK478192 | MK478319 | |
| RB125 | CBS 109224, BBA 70399 | C. lupini | L. albus | Austria | JQ948172 | JQ948502 | JQ949823 | MK478320 | |
| RB127 | PT702 | C. lupini | Olea europaea | Spain | MK463729 | MK463753 | MK478193 | MK478321 | |
| RB147 | IMI 350308 | C. lupini | Lupinus sp. | UK, Kent | 1991 | MK463730 | KM252203 | KM251951 | MK478322 |
| RB221 | IMI 504893 | C. lupini | Lupinus sp. | France, Brittany | 2016 | MK463733 | MK463756 | MK478196 | MK478345 |
| RB226 | C. lupini | Lupinus sp. | France, Brittany | 2016 | MK463738 | MK463761 | MK478201 | MK478350 | |
| CBS 129814 | T.A6 | C. tamarilloi | Solanum betaceum | Colombia, Gundinamarca | 2012 | JQ948184 | JQ948514 | JQ949835 | MW342584 |
| CBS 129955 | RB018, Tom-12 | C. tamarilloi | Solanum betaceum | Colombia, Antioquia, Santa Rosa | 1998 | JQ948189 | JQ948519 | JQ949840 | MK478307 |
| CBS 211.78 | IMI 309622, RB184 | C. costaricensis | Coffea sp. | Costa Rica, Turrialba | JQ948181 | JQ948511 | JQ949832 | MK478333 | |
| CBS 134730 | RB237 | C. melonis | Malus domestica | Brazil, Rio Grande do Brazil | KC204997 | KC205031 | KC205065 | MK478357 | |
| IMI 304,802 | RB216 | C. cuscutae | Cuscuta sp. | Dominica | JQ948195 | JQ948525 | JQ949846 | MK478340 | |
| IMI 384185 | CPC 18937, RB218 | C. paranaense | Caryocar brasiliense | Brazil | JQ948191 | JQ948521 | JQ949842 | MK478342 | |
| CBS 130239 | Frag NL-1 | C. nymphaeae | Fragaria x ananassa | The Netherlands | 2011 | JQ948250 | JQ948580 | JQ949901 | MW342583 |
| IMI 360928 | CPC 18926, RB163 | C. nymphaeae | Fragaria x ananassa | Switzerland, Zürich | 1993 | JQ948243 | JQ948573 | JQ949894 | MK478326 |
| CBS 122122 | BRIP28519, RB179 | C. simmondsii | Carica papaya | Australia | 1987 | JQ948276 | JQ948606 | JQ949927 | MK478332 |
| CBS 369.73 | NRCC 10081 | C. acutatum | L. angustifolius | New Zealand, Kumeu | 1968 | JQ948350 | JQ948681 | JQ950001 | MW342582 |
| CBS 370.73 | NRCC 10088, RB187 | C. acutatum | Pinus Aridata | New Zealand, Tokoroa | 1965 | JQ948351 | JQ948682 | JQ950002 | MK478335 |
JA strains from the FiBL culture collection characterized in this study, RB personal collection of Riccardo Baroncelli described in Dubrulle et al.39, CBS collection of the Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands, IMI Culture collection of CABI Europe UK Centre, Egham, UK, ITS internal transcribed spacers 1 and 2 together with 5.8S nrDNA, GAPDH glyceraldehyde-3-phosphate dehydrogenase, TUB2 β-tubulin 2, APN/MAT1 Apn2-Mat1-2-1 intergenic.
Codes in bold were used for morphology analysis in this study.
Accession numbers in bold are newly determined in this study.