TABLE 3.
Common quasispecies (low‐frequency variants) in the sequenced samples. Nucleotide positions refer to the position on the ‘Wuhan‐Hu‐1’ reference SARS‐CoV‐2 isolate. Next to the position the nucleotide present at any specific quasispecies variant is indicated. Numbers refer to the absolute number of reads that represented the respective variant. The ratio of the C variant (C ratio) per position is also presented (#)
| Sample | Owner | C2 | C3 | |||
|---|---|---|---|---|---|---|
| Position | Oropharyngeal | Faecal | Oropharyngeal | Faecal | ||
| 22685 | C | 2 | 62 | 1 | 151 | 2 |
| T | 7 | 166 | 0 | 559 | 5 | |
| C ratio# | 0.22 | 0.27 | 1.00 | 0.21 | 0.29 | |
| 23335 | C | 6 | 22 | 0 | 444 | 1 |
| T | 21 | 241 | 4 | 1658 | 30 | |
| C ratio# | 0.22 | 0.08 | 0.00 | 0.21 | 0.03 | |
| 24544 | C | 3 | 0 | 0 | 1,362 | 4 |
| T | 40 | 399 | 13 | 1,025 | 36 | |
| C ratio# | 0.07 | 0.00 | 0.00 | 0.57 | 0.10 | |