FIGURE 6.

Tissue-specific, position-phased, csGCNs colored by modules and containing differentially up or down regulated genes. (A) cortex phased co-expression network, (B) peel phased co-expression network. Triangles indicate upregulation in external canopy positions, diamonds indicate downregulation. Node color intensity indicates DE at different timepoints with darker colors showing differential expression at later timepoints. Significant differential expression was determined by Bonferroni P < 0.05. Colored edges and matching labels indicate major modules. Gray edges indicate minor modules with a small number of edges. See Supplementary File 3 for network files.