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. 2021 Jun 30;21:321. doi: 10.1186/s12872-021-02136-w

Table 2.

The double-stranded biotinylated oligonucleotides for EMSA

Regulatory variants Oligonucleotide sequences Locations
g.31360 T>C (rs372004083) 5′-TTTTTACACGGTAA(T/C)AGGGGCCCTGTGATTG-3′ 31346–31375
g.31436G>A 5′-CCCGCTGCGCTGGG(G/A)CCTCCAGGCTCTGAC-3′ 31422–31451
g.31437C>A (rs769262495) 5′-CCGCTGCGCTGGGG(C/A)CTCCAGGCTCTGACG-3′ 31423–31452
g.31487C>G 5′-GACACATTCCCCTC(C/G)CCCATACCCTGGAAG-3′ 31473–31502
g.31856C>T 5′-AACTAGCATCCAGC(C/T)GGGCACCCCGGGTGA-3′ 31842–31871

EMSA was performed with biotin-labeled oligonucleotide and H9c2 cell nuclear extracts. Free probe was indicated at the bottom. Solid arrows indicated the affected binding for unknown transcription factors

WT wild type, RV regulatory variant