Table 2.
Patient | Gender | Age | Variant1 | Annotation 1 | Variant2 | Annotation 2 | ATP7B 1056 (pmol/L) | ATP7B 887 pmol/L | CPL (mg/dl) | Leipzig Score | Liver Copper (ug/g Tissue) | KF Ring | Presentation |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
False Negative (n=17) | |||||||||||||
110 | F | 17 | p.G710A | Path | p.G710S | Path | 88.9 | 133.0 | 14 | 7 | - | N | - |
10 | M | 34 | p.G710S | Path | p.G710S | Path | 120.4 | 155.3 | <9 | 8 | - | Y | N |
11 | M | 17 | p.G710S | Path | p.G710S | Path | 193.2 | 264.3 | 12 | 10 | - | Y | B* |
12 | F | 44* | p.G710S | Path | p.G710S | Path | 151.1 | 193.6 | 9.1 | 11 | 164 | Y | N |
13 | M | 19 | p.G710S | Path | p.G710S | Path | 252.4 | 381.7 | 20.7 | 8 | 1243 | Y | B |
111 | M | 47 | p.M665I | Conflicting | p.G710S | Path | 133.9 | 213.0 | 15.5 | 7 | 324 | N | H |
112 | M | NA | p.M665I | Conflicting | p.G710S | Path | 94.9 | 144.4 | NA | 6 | 324 | N | H |
140 | F | 29 | p.R616Q | Path | p.L1305P | Path | 105.5 | 151.7 | 2 | 8 | - | Y | B |
149 | F | 17 | p.H1069Q | Path | p.M769V | Likely Path | 130.2 | 180.1 | 10 | 8 | 2047 | N | H |
150 | F | 31 | p.N41S /p.I1021V | Likely Path | p.M996T | Likely Path | 129.1 | 218.6 | 4 | 6 | >250 | N | H |
153 | F | 37 | p.H1069Q | Path | p.P1273L | Path | 105.3 | 188.5 | 8 | 10 | - | Y | N |
154 | F | 18 | p.M769H-fs | Path | p.P1273L | Path | 121.4 | 170.4 | 5 | 10 | - | Y | N |
170 | M | NA | p.H1069Q | Path | p.R969Q | Path | 90.5 | 131.4 | NA | 4 | - | - | - |
124 | M | 17 | p.Q7D-fs*14 | VUS | p.H1069Q | Path | 135.8 | 242.5 | 19 | 5 | - | N | H |
171 | F | 9 | p.H1069Q | Path | p.R969Q | Path | 145.6 | 220.9 | 16 | 5 | - | N | H |
176 | M | NA | p.R616W | Path | p.R969Q | Path | 134.2 | 134.2 | 25 | 7 | - | N | H |
183 | F | 31 | p.T977M | Path | p.T991A | VUS | 137.9 | 191.7 | 12 | 3 | - | Y | H |
Patients with One Pathogenic/Likely Pathogenic variant in Combination with one VUS (n=37) | |||||||||||||
124 | M | 17 | p.H1069Q | Path | p.Q7D-fs*14 | VUS | 135.8 | 242.5 | 19 | 5 | - | N | H |
125 | M | 9 | p.H1069Q | Path | p.Q7D-fs*14 | VUS | 79.4 | 176.3 | 16 | 5 | - | N | H |
131 | F | 13 | p.H1069Q | Path | p.I1007T-fs | VUS | ND | 5.4 | 14 | 5 | - | Y | H |
55 | M | 59 | p.H1069Q | Path | arr[GRCh37] 13q14.3(52541594_52548863)x1 | VUS | ND | 16.1 | 13 | 5 | - | Y | H |
87 | F | 19 | p.H1069Q | Path | p.D1447G-fs | VUS | 67.5 | 130.7 | 13 | 6 | - | N | H |
159 | M | 40 | p.R827W | Likely Path | p.R1320T | VUS | 58.7 | 93.4 | 13 | 7 | - | N | N |
133 | M | 18 | p.H1069Q | Path | p.K1028S-fs | VUS | ND | 3.9 | 12 | 7 | 842 | N | H* |
183 | F | 31 | p.T977M | Path | p.T991A | VUS | 137.9 | 191.7 | 12 | 3 | - | Y | H |
164 | F | NA | p.H1069Q | Path | p.R778P | VUS | ND | ND | 11 | 9 | 1332 | N | H |
118 | M | 6 | p.H1069Q | Path | p.G1011X | VUS | ND | 10.0 | 10 | 6 | - | N | H |
157 | F | 8 | p.R1041W | Likely Path | p.D765Y | VUS | 6.8 | 20.7 | 10 | 8 | 1211 | N | H |
163 | M | 2 months | p.R778L | Path | p.V1106I | VUS | 4.0 | 9.7 | 10 | - | - | N | A |
182 | M | 40 | p.T850I | Likely Path | p.G515S | VUS | 11.6 | 13.4 | 10 | 6 | - | Y | B |
67 | F | 17 | c.2865+1G>A | Path | p.Ser135* | VUS | ND | ND | <13 | 9 | - | N | H |
167 | F | 19 | p.H1069Q | Path | p.R919L | VUS | 3.6 | 22.1 | 9 | 10 | - | Y | N |
95 | M | 53 | p.H1069Q | Path | p.F1343dup | VUS | ND | ND | 9 | 3 | - | Y | H |
108 | M | 15 | p.H1069Q | Path | p.G1341E | VUS | ND | 10.4 | 6.7 | 8 | - | Y | H |
181 | F | 41 | p.G1266R | Path | p.T807I | VUS | 8.3 | 5.9 | 6 | 9 | 291 | N | H |
193 | F | 15 | p.S1365C-fs*12 | Path | p.Y743I-fs*19 | VUS | ND | ND | <6 | 7 | - | N | H |
80 | M | 40 | p.A874V | Path | c.2299InsC | VUS | 6.0 | 10.5 | 5.5 | 10 | 1575 | Y | H* |
120 | F | 13 | p.H1069Q | Path | p.Lys269* | VUS | ND | ND | 5 | 5 | 923 | N | H |
142 | M | 39 | p.T977M | Path | p.L1350P | VUS | 22.6 | 32.6 | 5 | 10 | - | Y | B |
76 | M | 5 | p.A1018V | Path | p.E458X | VUS | 26.4 | 47.5 | 4.1 | 8 | 793 | N | H |
141 | F | 46 | p.H1069Q | Path | p.L1333P | VUS | ND | 6.3 | 4 | 7 | - | Y | H |
184 | M | 10 | p.A874V | Path | p.V1106I | VUS | 20.1 | 15.5 | 4 | - | - | - | - |
119 | M | 38 | p.H1069Q | Path | p.K844E-fs*10 | VUS | ND | 8.7 | <4 | 4 | - | N | N |
79 | M | 59 | p.L1088X | Likely Path | p.A1135Q-fs*13 | VUS | ND | ND | <4 | 6 | - | Y | H |
165 | M | 15 | p.R778W | Path | p.K35N-fs*6 | VUS | 21.8 | 25.1 | <3 | 4 | - | N | H |
143 | F | 26 | p.R778L | Path | p.L770L | VUS | ND | ND | <3 | 9 | - | Y | H |
69 | F | 16 | p.T1029I | Path | c.3060+5G>C | VUS | 2.8 | ND | <3 | 8 | - | Y | H |
74 | F | 12 | p.H1069Q | Path | IVS19–1C>G | VUS | ND | 13.5 | 3 | 9 | - | Y | N |
188 | F | 8 | p.M645R | Path | p.V997-fs | VUS | 38.7 | 72.4 | 2.4 | 8 | >250 | N | H* |
102 | M | 9 | p.G1341D | Path | p.F1026F-fs | VUS | ND | ND | 2 | 10 | - | Y | N |
134 | F | 10 | p.M769H-fs | Path | p.K1028S-fs | VUS | ND | ND | 2 | 10 | - | Y | N |
72 | F | 24 | p.G710S | Path | c.3400delC | VUS | 57.7 | 96.6 | 0.6 | 12 | 448 | Y | B |
68 | M | 11 | c.1708–1g>c | Likely Path | c.2866–3c>g | VUS | 22.4 | 37.7 | NA | 6 | - | Y | H |
88 | F | 8 | p.M769H-fs | Path | p.D1460Y | VUS | 20.3 | 39.3 | low | 6 | - | N | H |
Patients with Two VUS’s (n=7) | |||||||||||||
86 | F | 68 | p.E332K | VUS | p.D1047V | VUS | 51.7 | 79.3 | 27 | 6 | 26 | N | B |
3 | M | 18 | p.G1335E | VUS | p.G1335E | VUS | ND | ND | <2 | - | - | Y | N |
9 | F | 15 | p.G1341E | VUS | p.G1341E | VUS | 2.2 | ND | 1.4 | 6 | - | N | H |
84 | M | NA | p.I1336V | VUS | p.C709T | VUS | 10.5 | 15.5 | 10 | 8 | 552 | N | H |
85 | F | NA | p.I1336V | VUS | p.C709T | VUS | ND | 6.3 | 13 | 7 | 900 | N | H |
186 | M | NA | p.S932L | VUS | p.V1364V-fs | VUS | ND | ND | 10 | 9 | - | N | B |
130 | M | 20 | p.T59H-fs*19 | VUS | p.H1247Q | VUS | 23.6 | 27.2 | <4 | 9 | 54 | Y | N |
Patients with Only One Variant Found (No 2nd variant detected) (n=18) | |||||||||||||
208 | M | 17 | c.2299delC | VUS | unknown | - | ND | ND | <2 | - | - | N | H |
209 | M | 19 | c.2299delC | VUS | unknown | - | ND | ND | <2 | - | 502 | N | N |
195 | F | 43 | c.51+4a>t | Path | unknown | - | 25.6 | 37.6 | 4 | 8 | - | Y | N |
196 | F | 28 | p.A1049A-fs | VUS | unknown | - | 2.2 | 9.1 | 3 | 7 | - | Y | N |
194 | M | 50 | p.D765N | Path | unknown | - | 20.4 | 21.4 | <4 | 8 | - | Y | N |
197 | M | 22 | p.G1176R | Path | unknown | - | 3.6 | 7.3 | 3 | 5 | - | N | H |
199 | M | 17 | p.H1069Q | Path | unknown | - | 8.6 | 32.9 | <10 | 5 | - | N | N |
201 | M | 14 | p.H1069Q | Path | unknown | - | 31.4 | 29.0 | 3.4 | - | - | N | N |
198 | F | NA | p.H1069Q | Path | unknown | - | ND | 5.0 | 12 | 6 | - | N | H |
200 | M | 14 | p.H1069Q | Path | unknown | - | ND | 6.7 | 13 | 4 | - | Y | H |
211 | F | 22 | p.H1069Q | Path | unknown | - | ND | 7.9 | 2 | 5 | - | N | N |
210 | M | NA | p.L1305P | Path | unknown | - | ND | 6.0 | NA | 3 | - | - | - |
202 | F | 16 | p.M769H-fs | Path | unknown | - | ND | ND | 13.8 | 6 | 525 | Y | H |
203 | M | 37 | p.R1319X | Path | unknown | - | 3.0 | 5.2 | <10 | 9 | 1042 | Y | B |
204 | M | 12 | p.R778L | Path | unknown | - | ND | 9.5 | <3.0 | 5 | - | N | H |
205 | M | 25 | p.T1220M | Likely Path | unknown | - | 67.7 | 77.0 | <10 | 4 | 191 | N | B |
207 | F | 18 | p.W779X | Path | unknown | - | 38.0 | 65.6 | 15.3 | 6 | 258 | N | H |
206 | M | 45 | p.W779X | Path | unknown | - | ND | ND | <^4 | 6 | - | Y | H |
KF ring: Y=Present, N=Not present
Presentation: H=Hepatic, N=Neurologic, A=Asymptomatic, B=Both Hepatic and Neurologic,
=Cirrhosis