Table 1.
Data collection information | ||
---|---|---|
Data set | EcAGPase-FBP complex | EcAGPase-AMP complex |
Nominal magnification | 47755x | 47755x |
Voltage (kV) | 300 | 300 |
Electron dose (e–/Å2) | 45.6 | 44.8 |
Pixel size (Å) | 1.047 | 1.047 |
Movie number | 2975 | 1681 |
Defocus average and range (μm) | 1.4 (0.2–2.6) | 1.7 (0.3–5.0) |
Frames | 40 | 40 |
Single-particle reconstruction information | ||||||
---|---|---|---|---|---|---|
Map | EcAGPase-FBP complex | EcAGPase-AMP complex | ||||
Final number of particle images in map | 297275 | 94769 | ||||
Symmetry imposed | D2 | C2 | C1 | D2 | C2 | C1 |
EMDB code | EMD-4754 | EMD-10199 | EMD-10201 | EMD-4761 | EMD-10203 | EMD-10208 |
Map resolution (Å) FSC=0.143 criterion |
3.05 | 3.16 | 3.24 | 2.95 | 3.09 | 3.26 |
Map sharpening B factor (Å2) |
−148.1 |
−139.9 |
131.2 |
−116.8 |
−114.5 |
−99.9 |
Model information | ||||||
Model |
EcAGPase-FBP complex |
EcAGPase-AMP complex |
||||
PDB ID | 6R8B | 6SHJ | 6SHN | 6R8U | 6SHQ | 6SI8 |
Atoms (Non-H) | 26092 | 25974 | 25359 | 26760 | 26874 | 26590 |
Protein residues | 1688 | 1664 | 1644 | 1700 | 1696 | 1700 |
Ligands | 4 | 4 | 2 | 4 | 4 | 4 |
Bonds (RMSD) | ||||||
Length (Å) | 0.01 | 0.01 | 0.016 | 0.01 | 0.01 | 0.01 |
Angles (°) | 1.34 | 1.01 | 1.34 | 1.35 | 1.38 | 1.40 |
Mean B-factor | ||||||
Protein | 153.64 | 163.46 | 94.72 | 134.96 | 136.07 | 88.79 |
Ligand | 176.65 | 191.65 | 101.34 | 127.23 | 126.19 | 82.53 |
MolProbity score | 2.11 | 2.02 | 1.89 | 2.30 | 2.04 | 1.79 |
Clashscore | 7.93 | 3.54 | 2.21 | 7.17 | 5.36 | 2.14 |
Rotamer outliers (%) | 3.12 | 3.58 | 4.81 | 3.32 | 2.28 | 2.45 |
Ramachandran plot | ||||||
Favored (%) | 95.71 | 92.90 | 94.47 | 91.43 | 92.06 | 91.31 |
Allowed (%) | 4.05 | 6.98 | 5.41 | 8.57 | 7.94 | 8.33 |
CC (volume) | 0.77 | 0.75 | 0.80 | 0.80 | 0.78 | 0.79 |
Mean CC for ligands | 0.74 | 0.66 | 0.74 | 0.84 | 0.82 | 0.84 |
CC (mask) | 0.77 | 0.75 | 0.81 | 0.80 | 0.79 | 0.79 |