Skip to main content
. 2021 Jun 30;4:822. doi: 10.1038/s42003-021-02320-w

Fig. 2. Identification of DE genes in the 4 samples.

Fig. 2

a PCA plot illustrating the distribution of the 4 samples (D n = 233, G n = 258, M n = 85, MG n = 268 cells). b Heatmap illustrating the DE genes corresponding to the 4 samples (Supplementary Data 3). The color represents the normalized expression level in natural-log scale of the corresponding genes of a cell (yellow is high). c UMAP plot of the 4 samples (D n = 233, G n = 258, M n = 85, MG n = 268 cells) based on the PC spaces in panel a. d Semi-supervised clustering identifies 4 clusters across the 4 samples. e Sankey plot illustrating the 4 samples mapping to the 4 SC3 clusters (cluster 1 n = 331, cluster 2 n = 193, cluster 3 n = 164, cluster 4 n = 156 cells). DE genes means differentially expressed genes.