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. 2020 Sep 13;68(3):1476–1486. doi: 10.1111/tbed.13816

Figure 3.

Figure 3

Phylogenetic relationships among Mycobacterium caprae strains genomes. Rooted phylogenetic tree based on maximum likelihood model (GTR‐CAT, RAxML) showing a SNP distance of the nine strains of the study area (SA) and 43 strains outside the SA isolated in Catalonia between 2008 and 2018. Root: Mycobacterium bovis AF 2122/97 reference strain sequence. Scale: 10 SNP. Two groups were identified: A, divided in three clusters (A.1, A.2 and A.3) and B. The nine strains of the SA are indicated by arrows as following: dairy goats forming the clade SA‐I within the cluster A.2 (blue), wild boars and meat goat forming the clade SA‐II within the cluster A.3 (red), and remaining wild boars of the cluster A.3 (green) [Colour figure can be viewed at wileyonlinelibrary.com]