Table 1.
The detailed information of the 22 SNPs
| SNP ID | Location | Aa | Alt | Gene ID | MT | AAC | Gene name | Biological process | Protein annotation |
|---|---|---|---|---|---|---|---|---|---|
| SNP01 | 63020 | C | A | Gene0056 | N | Q86H | HP | NA | Transposase |
| SNP10 | 695080 | T | C | Gene0658 | N | S194P | hcaR | Transcription regulation | Transcriptional activator for 3-phenylpropionic acid catabolism |
| SNP22 | 1283071 | A | G | Gene1205 | N | L186S | HP | NA | Hypothetical protein |
| SNP23 | 1338981 | A | C | Gene1257 | N | D484E | ram2 | Protein farnesylation | Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase |
| SNP27 | 1589637 | G | T | Gene1470 | N | L827M | trePP | Carbohydrate metabolic process | Trehalose 6-phosphate phosphorylase |
| SNP28 | 1590767 | T | G | Gene1470 | N | D450A | trePP | Carbohydrate metabolic process | Trehalose 6-phosphate phosphorylase |
| SNP32 | 1861048 | T | C | Gene1717 | S | T164T | yagU | Response to acidic pH | Inner membrane protein response to acidic |
| SNP41 | 2799363 | A | G | Gene2601 | S | E328E | spa | Virulence | Immunoglobulin G-binding protein |
| SNP43 | 2854610 | A | C | Gene2651 | N | D202A | gor | Glutathione metabolic process | Glutathione reductase |
| SNP47 | 3007289 | T | G | Gene2804 | S | A96A | int4 | DNA integration | Transposase |
| SNP46 | 3007122 | T | G | Gene2804 | N | S41A | int4 | DNA integration | Transposase |
| SNP50 | 3212834 | T | G | Gene3003 | N | F99L | ybhF | Transport | ABC transporter ATP-binding protein |
| SNP51 | 3213000 | G | T | Gene3003 | N | V155L | ybhF | Transport | ABC transporter ATP-binding protein |
| SNP55 | 3310964 | C | T | Gene3110 | N | G130S | tnp2PF3 | Transposition | Transposase |
| SNP56 | 3311024 | T | C | Gene3110 | N | T110A | tnp2PF3 | Transposition | Transposase |
| SNP57 | 3311155 | A | C | Gene3110 | N | V66G | tnp2PF3 | Transposition | Transposase |
| SNP58 | 3311174 | T | C | Gene3110 | N | N60D | tnp2PF3 | Transposition | Transposase |
| SNP60 | 3311545 | T | C | Gene3111 | N | K35E | tnp2PF3 | Transposition | Transposase |
| SNP59 | 3311468 | G | A | Gene3111 | S | S60S | tnp2PF3 | Transposition | Transposase |
| SNP61 | 1976363 | A | G | NA | NA | NA | NA | NA | NA |
| SNP62 | 1976367 | G | T | NA | NA | NA | NA | NA | NA |
| SNP71 | 3271378 | G | T | NA | NA | NA | NA | NA | NA |
“Aa” represented the original single nucleotide; “Alt” represented the mutated single nucleotide; “MT” represented mutation type, synonymous mutations or non-synonymous mutations; “AAC” represented amino acid changes