Table 2. Chilling germination-associated SNPs identified in this study.
| SNP | Chr. | Physical position | Allele frequency | Trait | P.value |
|---|---|---|---|---|---|
| PZE-108086767 | 1 | 220,338,489 | 46.21% (A), 32.85% (C) | RRS | 1.59E−06 |
| PZE-102118136 | 2 | 158,379,376 | 85.56% (A), 13.36% (G) | RRS | 1.01E−06 |
| PZE-102193367 | 2 | 236,235,981 | 40.07% (A), 58.48% (G) | SL | 9.85E−07 |
| PZE-103096466 | 3 | 156,304,805 | 16.25% (A), 75.81% (C) | FG | 2.71E−07 |
| SYN8915 | 3 | 196,150,129 | 15.52% (A), 75.45% (G) | TG | 9.73E−07 |
| PZE-104042136 | 4 | 58,031,648 | 41.52% (A), 53.79% (C) | RL, SL | 3.67E−08, 1.03E−06 |
| PZE-105052784 | 5 | 48,384,424 | 36.10% (A), 58.12% (C) | FG | 1.82E−07 |
| PZE-105056721 | 5 | 54,915,313 | 43.32% (A), 53.79% (C) | TG | 5.95E−07 |
| PZE-107018981 | 7 | 17,240,858 | 74.01% (A), 16.97% (G) | FG, TG | 8.10E−08, 1.67E−07 |
| SYN19853 | 7 | 161,949,846 | 24.19% (A), 74.73% (C) | RL | 1.17E−06 |
| SYN13495 | 7 | 125,974,879 | 57.40% (A), 37.91% (C) | FG | 3.86E−08 |
| PZE-108063385 | 8 | 113,291,192 | 54.15% (A), 44.40% (G) | FG, TG, SL, RL, RRS | 3.86E−08, 8.10E−08, 6.31E−07, 3.67E−08, 4.78E−07 |
| PZE-108134421 | 8 | 173,977,740 | 31.41% (A), 57.40% (G) | TG | 4.27E−07 |
| SYN2994 | 8 | 112,768,552 | 44.40% (A), 52.35% (G) | RL | 4.18E−07 |
| PZB02554.2 | 10 | 142,190,907 | 31.33% (A),66.00% (C) | TG | 1.10E−06 |
Notes.
Chr., chromosome.