TABLE 6.
Number genes with successful TWAS prediction under no imputation and imputation scenarios
| Trait | Number of original variants | Number of Imputed variants | Number of gene‐tissue pairs with TWAS statistics under no imputation scenario | Number of gene‐tissue pairs with TWAS statistics under imputation scenario |
|---|---|---|---|---|
| BIP | 13,413,244 | 13,800 | 26,772 | 26,894 |
| MDD | 13,554,550 | 14,805 | 26,734 | 26,889 |
| PTSD | 9,766,174 | 27,439 | 26,513 | 26,892 |
| PTSD‐REX | 4,374,623 | 189,823 | 21,634 | 26,894 |
| SCZ | 14,225,895 | 6,444 | 26,846 | 26,894 |
Abbreviation: TWAS, transcriptome wide association study.