Table 3.
AMR, virulence and metal resistance genes identified in the D. tsuruhatensis TR1180 genome.
| Category | Classification of resistance/virulence genes | Related genes |
|---|---|---|
| Antimicrobial gene | β-Lactam | bla OXA-118 |
| Aminoglycoside | aac(6’)-Ib3, aadA2 | |
| Phenicol | floR | |
| Fluoroquinolone | OqxB | |
| Tetracycline | tet(G) | |
| Sulphonamide | 2sul1 | |
| Trimethoprim | dfrA16 | |
| Multidrug | mexC, mexD, oprJ, adeB, abeS, soxR, mdtC, muxB | |
| Virulence gene | Flagella (offensive virulence factors) | cheY, cheW, flgC, flgG, fliI, fliP |
| Type IV pili (offensive virulence factors) | pilG, pilT, pilT2 | |
| Type VI secretion system (offensive virulence factors) | clpV1, hsiC1/vipB, hsiB1/vipA | |
| AdeFGH efflux pump/transport autoinducer (offensive virulence factors) | adeG | |
| LPS (offensive virulence factors) | acpXL | |
| Hsp60 (offensive virulence factors) | htpB | |
| Acid resistance (defensive virulence factors) | ureB, ureG | |
| Iron uptake system (nonspecific virulence factor) | bauC, bauD, fepC, pvdF | |
| Stress protein (nonspecific virulence factor)) | sodB, clpP, katA | |
| Metal resistance gene | Mercury | merE, merD, 2merA, merF, merP, 2merT, 2merR |
| Copper | copA, copB, copC, copF, copG, 2copR, copS, cusA | |
| Arsenate | arsB, 2arsC, arsH | |
| Lead | pbrT | |
| Chromate | chrA | |
| Magnesium | mgtA | |
| Nickel-cobalt | cnrA | |
| Cobalt-zinc-cadmium | 2czcA |