Table 1. Mathematical Model Parameters.
Buffering & Scaling | |||
Symbol | Value | Description | Reference |
fc | 0.01 | Cytosolic Ca2+ buffering | [38] |
fER | 0.025 | ER Ca2+ buffering | [38] |
γ | 9 | cytosol/ ER volume ratio | [39] |
Plasma Membrane Fluxes | |||
JINleak | 0.15 μMs-1 | Inward leak across plasma membrane | Fitted† |
vPMCA | 30 μMs-1 | Maximum PMCA activation | Fitted† |
kPMCA | 0.45 μM | PMCA Ca2+ affinity | [32] |
ER Fluxes | |||
vSERCA | 22.5 μMs-1 | Maximum SERCA activation | Fitted† |
kSERCA | 0.105 μM | SERCA Ca2+ affinity | [32] |
vERleak | 0.03 s-1 | Rate of Ca2+ leak across ER membrane | Fitted† |
Li Rinzel IP3R Models | |||
d1 | 0.13 μM | IP3 dissociation constant (Ca2+ unbound from inactivation site) | [24] |
d2 | 1.049 μM | Ca2+ dissociation constant from the inactivation site (IP3 bound) | [24] |
d3 | 0.9434 μM | IP3 dissociation constant (Ca2+ bound to inactivation site) | [24] |
d5 | 0.08234 μM | Ca2+ dissociation constant from activation site | [24] |
a2 | 0.2 μMs-1 | Ca2+ binding rate to the inactivation site | [24] |
vIP3R | 15 μMs-1 | Maximum flux through IP3Rs | Fitted† |
P2X7R Model | |||
gX7 | 2.5x10-8 Ms-1 | P2X7R conductance of both naïve and sensitized open states | Adjusted*** |
E | 0 mV | Reversal potential | [18] |
k1 | 0.3 s-1 | Transition rates between states (Fig 3B, along the same row) | [18] |
k2 | 1265 M-1s-1 | [18]* | |
k3 | 2.4 s-1 | [18] | |
k4 | 1581 M-1s-1 | [18]* | |
k5 | 1.58 s-1 | [18] | |
k6 | 221 M-1s-1 | [18]* | |
k7 | 316 M-1s-1 | [18]* | |
L1 | 0.0001 | Transition rates between naïve (Fig 3B, middle row) and sensitized (Fig 3B, bottom row) | [18] |
L2 | 0.004 | [18] | |
L3 | 0.3 | [18] | |
H1 | 0.001 | Transition rates between naïve (Fig 3B, middle row) and desensitized (Fig 3B, upper row) | [18] |
H2(C2) | 0.01 | [18] | |
H2(Q1) | 0.05 | Adjusted*** | |
H2(Q2) | 0.8 | Adjusted*** | |
V | -0.06 V | Membrane Potential | [18] |
fCa | 0.046 | Fraction of P2X7R flux that is Ca2+ | [36] |
Vosteo | 6.5 pL | Osteoblast volume | [35,40] |
IP3 Dynamics | |||
αATP | 0.03 μMs-1 | Maximum rate of IP3 production driven by ATP | [30,41]** |
kATP | 1 μM | Sensitivity of IP3 production to [ATP] | Fitted† |
δ | 0.01 s-1 | Degradation rate of IP3 | [30,41]** |
*Parameter values in [18] were fitted to BzATP. To capture the lower binding affinity of ATP to P2X7R, these parameter values were rescaled here (by dividing them by the factor 31.625).
**Parameter values from [30] were used as an upper bound for the parameters in this work, based on the significantly slower IP3 dynamics reported in living cells in [41].
*** As stated in the text, these values were adjusted due to the evidence that P2X7R do not dilate and that P2X7R desensitization increases with more ATP binding.
†These parameter values were determined by fitting the model to data of dose-responses of ATP-induced [Ca2+]i elevations shown in Fig 7.