Table 2. PDB data sets used to test the SM -ipp and SM phasing algorithms corresponding to compounds with strong scatterers.
Residues, space group, c, %Sol and d min as in Table 1 ▸. N = number of non-H atoms in the unit cell (PDB); M and S = number of medium and strong scatterers; H2O = number of refined water molecules. Data sets 2bf9, 8rxn and 1c7k measured at room temperature; otherwise at 100 K.
| PDB code | Compound | Residues | Space group | N/c | (M+S)/c | H2O/c | %Sol | d min |
|---|---|---|---|---|---|---|---|---|
| 2bf9 | aPP(1) | 36 | C2 | 768 | 2Zn | 164 | 31 | 1.00 |
| 8rxn | Rubredoxin(2) | 52 | P21 | 1010 | 12S+2Fe | 204 | 35 | 1.00 |
| 1w3m | Tsushimycin(3) | 132 | P1 | 1276 | 10Cl+24Ca | 191 | 35 | 1.00 |
| 2ov0 | Amicyanin(4) | 105 | P21 | 2060 | 6S+2P+2Cu | 432 | 34 | 0.95 |
| 1c75 | Cythochrome 553(5) | 71 | P212121 | 2660 | 12S+4Fe | 500 | 38 | 0.97 |
| 3d1p | Transferase(6) | 120 | C2 | 2702 | 2S+2Cl+4Se | 498 | 29 | 0.95 |
| 1pwl | Aldose reductase Br(7) | 316 | P1 | 3030 | 14S+3P+1Br | 429 | 25 | 1.10 |
| 1a6m | Myoglobin(8) | 151 | P21 | 3154 | 8S+2Fe | 372 | 36 | 1.00 |
| 41au | Geodin(9) | 161 | P21 | 3278 | 2Ca+ 6Se† | 740 | 40 | 0.99 |
| 1eb6 | Deuterolysin(10) | 177 | P21 | 3300 | 12S+2Zn | 518 | 39 | 1.00 |
| 1b0y | H42Q(11) | 85 | P212121 | 3348 | 36S+16Fe | 824 | 30 | 0.90 |
| 1x8q | Nitrophorin 4C(12) | 184 | C2 | 3662 | 10S+2Fe | 720 | 24 | 0.90 |
| 2fdn | Ferredoxin(13) | 55 | P4322 | 3964 | 128S+64Fe | 768 | 35 | 1.00 |
| 3fsa | Azurin(14) | 125 | P212121 | 4488 | 36S+4Cu | 856 | 38 | 1.00 |
| 1c7k | Endoprotease Zn(15) | 132 | P212121 | 4532 | 12S+4Ca+4Zn | 464 | 37 | 1.00 |
| 3ks3 | H. C. anhydrase II(16) | 260 | P21 | 5626 | 6S+2Zn | 962 | 41 | 0.95 |
| 1heu | L. A. dehydrogenase(17) | 748 | P1 | 7618 | 58S+4Cd | 1297 | 50 | 1.15 |
(1) Glover et al. (1983 ▸); (2) Dauter et al. (1992 ▸); (3) Bunkóczi et al. (2005 ▸); (4) Carrell et al. (unpublished); (5) Benini et al. (2000 ▸); (6) Nocek et al. (unpublished); (7) El-Kabbani et al. (2004 ▸); (8) Vojtěchovský et al. (1999 ▸); (9) Fanfrlik et al. (2013 ▸); (10) McAuley et al. (2001 ▸); (11) Parisini et al. (1999 ▸); (12) Kondrashov et al. (2004 ▸); (13) Dauter et al. (1997 ▸); (14) Sato et al. (2009 ▸); (15) Kurisu et al. (2000 ▸); (16) Avvaru et al. (2010 ▸); (17) Meijers et al. (2001 ▸).
Four disordered Se positions.