a 3D reconstruction of the 1:1 c-MET I/HGF I complex after focused 3D refinement of holo-complex, and the corresponding ribbon representation of this complex fitted into the cryo-EM map at 4.5 Å resolution. b The ribbon representation of the c-MET I/HGF I complex shown in side and top views. Four distinct interfaces that are involved in the interaction between c-MET I and HGF I are indicated by dash boxes. Heparin is shown in yellow as a stick model. c–e Close-up views of interfaces I, II, and III. The HGF and c-MET residues mutated for cell-based activity assays are indicated by rectangular boxes. f The levels of c-MET autophosphorylation in response to HGF wild-type (WT) or indicated mutants that were expected to disrupt c-MET I/HGF I interaction. Mean ± SEM are from N = 3 independent biological repeats. The representative raw western blot data were shown in Supplementary Fig. 5. g HGF-induced c-MET autophosphorylation in H1299 cells expressing c-MET WT or indicated mutants that were expected to disrupt C-MET I/HGF I interaction. Mean ± SEM are from N = 5 independent biological repeats. The representative western blot data were shown in Supplementary Fig. 6. h SDS-PAGE of TSE pull-down binding assay. TSI tagged c-MET927 was immobilized to TSE resin as bait and incubated with HGF WT and various of mutations as prays. i Quantification of the pull-down binding results for the HGF R242E/K244E/R249E, W321R/E361R/Y376A, and Y673A mutants shown in h. Mean ± SEM are from N = 3 independent biological repeats. Statistical difference in f, g, and i was analyzed using two-tailed Student’s t-test, and P values were calculated between WT and mutants: ns, P > 0.05; *P ≤ 0.05; **P ≤ 0.01; ***P ≤ 0.001. Source data are provided as a Source Data file. Exact P values in f from left to right: <0.0001, 0.0124, 0.0083, <0.0001, 0.0021, 0.0251, 0.0184, 0.0361, 0.0020, 0.0284, 0.9957, 0.9414, 0.4498, 0.0038, 0.0013, <0.0001, <0.0001. Exact P values in g from left to right: <0.0001, 0.0042. Exact P values in i from left to right: 0.0353, 0.0424, 0.0006.