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. 2021 Jun 18;9:692200. doi: 10.3389/fchem.2021.692200

TABLE 2.

The averaged RESP charge of zinc ion and its ligated atoms in the MD simulation. The unit of charge is e.

1ZIN (CCCC) Coordinated atoms Zn2+ Sγ@C5 Sγ@C8 Sγ@C25 Sγ@C28
NN/MM-RESP-MBG 1.25 −0.85 −0.87 −0.86 −0.84
Amber 2 −0.88 −0.88 −0.88 −0.88
2L30 (CCCH) Coordinated atoms Zn2+ Sγ@C5 Sγ@C8 Nδ@H37 Sγ@C40
NN/MM-RESP-MBG 0.98 −0.87 −0.95 −0.41 −0.81
Amber 2 −0.88 −0.88 −0.57 −0.88
1AAY (CCHH) Coordinated atoms Zn2+ Sγ@C5 Sγ@C10 Nε@H23 Nε@H27
NN/MM-RESP-MBG 0.83 −0.82 −0.81 −0.37 −0.42
Amber 2 −0.88 −0.88 −0.57 −0.57
1HFS (HHHO) Coordinated atoms Zn2+ Nε@H64 Oδ1/Oδ2@D66 Nε@H78 Nδ@H92
NN/MM-RESP-MBG 0.98 −0.51 −0.64/−0.87 −0.43 −0.38
Amber 2 −0.57 −0.88 −0.57 −0.57