TABLE 3.
Genes associated with animal coloration that overlap with the selected regions under detected by the FST or Hp approach.
| Method | Scaffolda | Gene symbol | Summary of gene function |
| FST (Top 3%) | NW_013185770.1 | AP3B1 | Melanin formation (Jing et al., 2014) |
| NW_013185722.1 | SLC16A2 | Pigment-related (Baxter et al., 2019) | |
| NW_013185909.1 | SMARCA2 | Melanin formation (Mehrotra et al., 2014) | |
| NW_013185915.1 | VAMP7 | Melanin formation (Yatsu et al., 2013) | |
| Hp (Top 3%) | NW_013185722.1 | SLC16A2 | Pigment-related (Baxter et al., 2019) |
| NW_013185840.1 | ROR2 | Melanin formation (O’Connell et al., 2013) | |
| NW_013185881.1 | CSNK1G3 | Pigment-related (Al Robaee et al., 2020) | |
| NW_013185883.1 | CCDC112 | Pigment-related (Tian et al., 2014) | |
| NW_013185915.1 | VAMP7 | Melanin formation (Yatsu et al., 2013) |
aAnsCyg_PRJNA183603_v1.0 primary assembly.
Gene names in bold have LoF variation according to VEP annotation.