TABLE 3.
The top 20 significantly up- or downregulated genes in muscle of sick barramundi.
| Gene ID/name | Log2 fold change | P (adj) | Up/downregulation | Gene description |
| LOC108885100 | 9.14 | 9.88E-10 | Up | Toll-like receptor 13 |
| acod1 | 8.21 | 0.01243 | Up | Aconitate decarboxylase 1 |
| LOC108874726 | 7.77 | 1.16E-05 | Up | Neoverrucotoxin subunit alpha-like |
| donson | 7.55 | 0.00698 | Up | DNA replication fork stabilization factor DONSON |
| LOC108873250 | 7.52 | 0.00011 | Up | Granulocyte colony-stimulating factor-like |
| LOC108888912 | 7.50 | 0.00171 | Up | Toll-like receptor 5 |
| chrng | 7.40 | 0.02103 | Up | Cholinergic receptor, nicotinic, gamma |
| LOC108880557 | 7.35 | 0.00275 | Up | Fc receptor-like protein 5 |
| LOC108893722 | 7.15 | 0.00854 | Up | Mucin-5AC-like |
| LOC108897018 | 7.04 | 0.00344 | Up | Interleukin-1 receptor type 2-like |
| LOC108884001 | 7.01 | 0.01199 | Up | Protein OSCP1-like |
| LOC108890809 | 6.55 | 0.00172 | Up | Hydroxycarboxylic acid receptor 2-like |
| LOC108880702 | 6.54 | 0.00167 | Up | Carcinoembryonic antigen-related cell adhesion molecule 20-like |
| LOC108894065 | 6.29 | 0.02952 | Up | Matrix metallopeptidase 13a |
| gadl1 | 6.09 | 1.56E-06 | Up | Glutamate decarboxylase like 1 |
| LOC108884332 | 5.74 | 0.00011 | Up | Acyl-coenzyme A thioesterase 2, mitochondrial-like |
| lrriq1 | 5.72 | 0.01210 | Up | Leucine-rich repeats and IQ motif containing 1 |
| LOC108886122 | 5.54 | 1.40E-05 | Up | Arginase 1 |
| LOC108883738 | 5.433 | 0.00090 | Up | Carboxypeptidase N subunit 2 |
| alpl | 5.335 | 5.08E-05 | Up | Alkaline phosphatase, biomineralization associated |
| lhx8 | –6.40 | 0.04081 | Down | LIM homeobox 8 |
| foxe1 | –6.42 | 0.00211 | Down | Forkhead box E1 |
| cd248 | –6.50 | 0.00630 | Down | CD248 molecule |
| dlx6 | –6.52 | 0.03813 | Down | Distal-less homeobox 6a |
| LOC108900437 | –6.55 | 0.00378 | Down | Tissue alpha-L-fucosidase-like |
| LOC108890438 | –6.61 | 0.00038 | Down | Nuclear factor 7, ovary-like |
| folh1b | –6.67 | 0.00124 | Down | Folate hydrolase 1B |
| LOC108877493 | –6.87 | 0.00073 | Down | EF-hand and coiled-coil domain-containing protein 1-like |
| LOC108892256 | –6.95 | 0.00378 | Down | dickkopf-related protein 2-like |
| LOC108890833 | –6.97 | 0.02433 | Down | Solute carrier family 12 member 3-like |
| LOC108893465 | –7.23 | 0.00627 | Down | von Willebrand factor A domain-containing protein 7-like |
| LOC108874532 | –7.23 | 0.00811 | Down | Interferon-induced protein 44-like |
| gpr17 | –7.35 | 0.00062 | Down | G protein-coupled receptor 17 |
| LOC108889688 | –7.68 | 0.00657 | Down | Growth arrest-specific 2b |
| LOC108890725 | –7.71 | 0.00162 | Down | E3 ubiquitin-protein ligase TRIM21-like |
| mei1 | –8.39 | 0.03185 | Down | Meiotic double-stranded break formation protein 1 |
| LOC108896482 | –8.64 | 0.02613 | Down | Secretory calcium-binding phosphoprotein 7 |
| LOC108878074 | –8.92 | 0.04369 | Down | Golgi-associated plant pathogenesis-related protein 1-like |
| LOC108897956 | –9.83 | 0.01199 | Down | Calpain-2 catalytic subunit-like |
| LOC108890739 | –10.12 | 0.038363 | Down | Complement C1q tumor necrosis factor-related protein 1-like |
Given in descending order of log2 fold-change.