TABLE 2.
Length | Number | |||
---|---|---|---|---|
Contig a (bp) | Scaffold (bp) | Contig a | Scaffold | |
Assembly v1 (Illumina +PacBio +10X + BioNano) | ||||
Total | 652,885,881 | 656,774,640 | 2066 | 949 |
Max | 4,254,538 | 20,459,086 | ‐ | ‐ |
Number > =2000 | ‐ | ‐ | 1990 | 873 |
N50 | 784,561 | 3,429,555 | 250 | 52 |
N60 | 632,116 | 2,673,626 | 342 | 73 |
N70 | 483,912 | 2,112,119 | 459 | 101 |
N80 | 346,983 | 1,573,287 | 618 | 137 |
N90 | 207,456 | 964,101 | 856 | 189 |
Assembly v2 (Assembly v1 + Hi‐C) | ||||
Total | 652,885,881 | 656,813,740 | 2262 | 755 |
Max | 4,254,538 | 122,620,176 | ‐ | ‐ |
Number > =2000 | ‐ | ‐ | 2186 | 679 |
N50 | 743,350 | 93,205,713 | 264 | 3 |
N60 | 578,736 | 89,409,058 | 364 | 4 |
N70 | 451,341 | 85,026,703 | 492 | 5 |
N80 | 320,782 | 69,840,041 | 665 | 6 |
N90 | 184,498 | 60,483,854 | 929 | 7 |
Contig after scaffolding.