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. 2021 Jul 2;21:201. doi: 10.1186/s12866-021-02129-x

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 1 — Composition of the resistome and microbiome in 420 infant gut samples. All samples are ordered by increasing sample age at collection and the black vertical lines demarcate the 6-week samples from the 1-year samples. (a) Overall relative abundance (in RPKM) of the 10 antimicrobial resistance genes with the greatest mean abundance across all samples. (b) Compositional relative abundance of the 10 antimicrobial resistance genes with the greatest mean compositional abundance across all samples. (c) Compositional relative abundance of Proteobacteria. For (a) and (b), antimicrobial resistance genes are colored red if they are tet genes and blue or purple otherwise