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Overview of the whole proteome tryptic digest data sets. (A) Table of total and unique peptides, as well as proteins for all six whole proteome tryptic digest data sets. Proteins identified with single peptides are included in the tally. Venn diagrams illustrating the overlap of the unlabeled, TMT11, and TMTpro16 data sets at the peptide level (B) without using FAIMS and (C) with FAIMS, and at the protein level (D) without FAIMS and (E) with FAIMS.
