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. 2021 Jul 6;135:104634. doi: 10.1016/j.compbiomed.2021.104634

Fig. 5.

Fig. 5

(A) PCA mode 1 (B) PCA mode 2 (C) PCA mode 3 and (D) conformational ensemble of Spike RBD obtained after RMSD-based clustering of 1 μs trajectory. Three representative conformations from the top three clusters are shown in green color and crystal structure is shown in orange color. Rectangular box encloses the predicted binding site in spike RBD.