Supplement Table 4. All somatic single nucleotide variant identified in discovery cohort.
| Sample | NR7 | NR5 | NR4 | NR8 | R1 | R3 | NR6 | NR1 | R4 | R2 | NR2 | R5 | NR3 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CDS | 112 | 202 | 276 | 19 | 189 | 10 | 48 | 61 | 152 | 335 | 155 | 320 | 87 |
| synonymous_SNP | 30 | 53 | 59 | 5 | 49 | 6 | 24 | 17 | 38 | 92 | 38 | 91 | 28 |
| missense_SNP | 69 | 136 | 194 | 12 | 126 | 4 | 24 | 38 | 97 | 211 | 100 | 208 | 48 |
| stopgain | 12 | 6 | 15 | 1 | 4 | 0 | 0 | 5 | 13 | 18 | 11 | 11 | 7 |
| stoploss | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 |
| unknown | 1 | 6 | 7 | 1 | 9 | 0 | 0 | 1 | 4 | 13 | 6 | 9 | 4 |
| intronic | 219 | 389 | 359 | 50 | 348 | 53 | 267 | 144 | 330 | 497 | 245 | 628 | 100 |
| UTR3 | 13 | 39 | 34 | 2 | 22 | 3 | 14 | 3 | 18 | 35 | 14 | 33 | 11 |
| UTR5 | 16 | 22 | 20 | 3 | 18 | 0 | 8 | 2 | 13 | 26 | 17 | 37 | 12 |
| splicing | 6 | 9 | 10 | 1 | 5 | 0 | 1 | 2 | 5 | 10 | 6 | 9 | 4 |
| ncRNA_exonic | 13 | 19 | 10 | 6 | 16 | 1 | 12 | 12 | 17 | 22 | 4 | 21 | 9 |
| ncRNA_intronic | 20 | 33 | 45 | 27 | 37 | 21 | 48 | 24 | 32 | 47 | 25 | 46 | 19 |
| ncRNA_UTR3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ncRNA_UTR5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ncRNA_splicing | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 |
| upstream | 10 | 11 | 14 | 3 | 9 | 2 | 15 | 2 | 14 | 19 | 8 | 37 | 2 |
| downstream | 3 | 3 | 0 | 1 | 8 | 1 | 6 | 3 | 3 | 3 | 2 | 10 | 5 |
| intergenic | 126 | 122 | 126 | 82 | 133 | 87 | 110 | 101 | 124 | 136 | 100 | 146 | 72 |
| Total | 539 | 852 | 897 | 195 | 787 | 178 | 529 | 354 | 709 | 1131 | 577 | 1288 | 322 |