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. 2021 Jul 6;17(7):e1009689. doi: 10.1371/journal.ppat.1009689

Table 1. Primer design for VZV BAC recombineering.

# Gene Direction Primer Sequence (5’ ➔ 3’)
1 ORF4 Fwd AGGCAACTGCAAACACGCAATTGTCAGATATTTTGCAGCCggatccgccaccatgatcagtctgattgcggcgttagcg
Rev TCACAAATAGTAGACACGTCTGGGTCGGTTGGAATTGAAGCAGAGGCGCAtgctcgccgctccagaatct
2 ORF9 Fwd CGTGTTTGGATATTTCACGACCCTATCGTTTATTTACGTAggatccgccaccatgatcagtctgattgcggcgttagcg
Rev CATTAGAGCGACAAAGTCTGTCACCGTCGGAAGATGCCATtgctcgccgctccagaatct
3 ORF63 Fwd AGCCCCGCGCCGGCATGATATACCGCCCCCCCATGGCGTGatgatcagtctgattgcggc
Rev AAGACACGAGCCAAACCATTGTATTTATTTATAAAGActatgctcgccgctccagaatct
4 ORF70 Fwd GTTTTGTTGTGCAGGGTTCGTCCGATTCATAACGCGACAGaaatgtgcgcggaacccctatttg
Rev TATCCACAACACCCCACTCCCCCACAGACAGACATCAAAActtggtctgacagttaccaatgctt

Uppercase letters in all rows denote bases that share sequence homology with VZV for directional recombination. Lowercase letters are sequences homologous to the E. coli DHFR degron insert sequence (#1, 2, 3) or ampicillin resistance cassette sequence (#4).