Table 1. Primer design for VZV BAC recombineering.
# | Gene | Direction | Primer Sequence (5’ ➔ 3’) |
---|---|---|---|
1 | ORF4 | Fwd | AGGCAACTGCAAACACGCAATTGTCAGATATTTTGCAGCCggatccgccaccatgatcagtctgattgcggcgttagcg |
Rev | TCACAAATAGTAGACACGTCTGGGTCGGTTGGAATTGAAGCAGAGGCGCAtgctcgccgctccagaatct | ||
2 | ORF9 | Fwd | CGTGTTTGGATATTTCACGACCCTATCGTTTATTTACGTAggatccgccaccatgatcagtctgattgcggcgttagcg |
Rev | CATTAGAGCGACAAAGTCTGTCACCGTCGGAAGATGCCATtgctcgccgctccagaatct | ||
3 | ORF63 | Fwd | AGCCCCGCGCCGGCATGATATACCGCCCCCCCATGGCGTGatgatcagtctgattgcggc |
Rev | AAGACACGAGCCAAACCATTGTATTTATTTATAAAGActatgctcgccgctccagaatct | ||
4 | ORF70 | Fwd | GTTTTGTTGTGCAGGGTTCGTCCGATTCATAACGCGACAGaaatgtgcgcggaacccctatttg |
Rev | TATCCACAACACCCCACTCCCCCACAGACAGACATCAAAActtggtctgacagttaccaatgctt |
Uppercase letters in all rows denote bases that share sequence homology with VZV for directional recombination. Lowercase letters are sequences homologous to the E. coli DHFR degron insert sequence (#1, 2, 3) or ampicillin resistance cassette sequence (#4).