Table 2.
Gene | SNP | Chromosome | Position | Distance to TSS** | Function | Allele | MAF in CHB |
---|---|---|---|---|---|---|---|
GTF2I | rs117026326 | 7 | 74711703 | 54,040 | intron variant | C>T | 0.117 |
GTF2I | rs73366469* | 7 | 74619286 | 38,394 | regulatory region variant | T>C | 0.155 |
NFKB1 | rs1599961 | 4 | 102522412 | 21,083 | intron variant | G>A | 0.388 |
TYK2 | rs2304256 | 19 | 10364976 | 15,700 | missense variant | C>A | 0.456 |
*The distance between rs73366469 and GTF2IRD1 is 1 kb, whereas the distance between rs73366469 and GTF2I is 28 kb. Here, we assign rs73366469 to GTF2I. **TSS, transcription start sites.