PADI1 contributes to EMT in PAAD by activating the ERK1/2-p38 signaling pathway

Abstract

Background

Peptidylarginine deiminase 1 (PADI1) has been reported to promote tumorigenesis in breast cancer. However, the functional role of PADI1 in pancreatic ductal adenocarcinoma (PAAD) has remained elusive until now.

Methods

The expression pattern of PADI1 in PAAD tissues and normal tissues was analyzed using The Cancer Genome Atlas (TCGA) dataset. A Kaplan-Meier curve analysis was performed to evaluate the prognostic value of PADI1 in PAAD patients. PADI1 was knocked down in CFPAN-1 and HPAC cells, and overexpressed in PANC-1 and Bxpc-3 cells by RNA interference. A wound-healing assay was performed to analyze relative cell migration distance. Cell migration and invasion were assessed by a Transwell assay. Related protein expression levels were measured by western blot and immunofluorescence.

Results

The bioinformatics analysis showed that PADI1 was overexpressed in PAAD tissues and associated with a poor survival prognosis. The knockdown of PADI1 suppressed cell migration and invasion, and activated the ERK1/2-p38 signaling pathway in CFPAN-1 and HPAC cells. The overexpression of PADI1 produced the opposite results in PANC-1 and Bxpc-3 cells. Additionally, treatment with an MEK1/2 inhibitor significantly attenuated the effects of PADI1 knockdown on cell migration, invasion, the epithelial-mesenchymal transition (EMT) process, and p-ERK1/2 and p38 expression in CFPAN-1 and HPAC cells.

Conclusions

Our data suggested that PADI1 may function as an oncogene in regulating metastasis in vitro in PAAD.

Introduction

Pancreatic ductal adenocarcinoma (PAAD), which accounts for nearly 85% of pancreatic cancers, represents one of the leading causes of digestive tract malignancy-related deaths, and has a 5-year survival rate of less than 10% (1,2). Despite great progress being made in traditional therapeutic treatments, including surgical resection, chemotherapy and radiotherapy, against PAAD, the prognosis of patients with PAAD still remains poor, which can mainly be attributed distant metastasis and local invasion (3,4). Various targeted therapies are being studied in clinical trials to target tumor DNA repair mechanism, tumor metabolic pathways, focal adhesion kinase, and connective tissue growth factors (5). Thus, it is of great importance to explore the underlying molecular mechanisms to improve the prognosis of this deadly disease.

Metastasis has been widely considered the major challenge in the clinical therapy of PAAD, which begins with the epithelial-mesenchymal transition (EMT), including the loss of cell-cell adhesion, unrestrained cell migration, and invasion (6,7). The activation of the EMT is associated with the changed expression of many genes, including the downregulation of epithelial markers (e.g., occluden-1 and E-cadherin) and the upregulation of mesenchymal markers (e.g., N-cadherin and vimentin) (8). In addition, the mitogen-activated protein kinase (MAPK) pathway plays a significant role in the initiation of the EMT, which is prevalent in many cancers, including pancreatic cancer (9) and ovarian cancer (10). The MAPK family includes three subfamilies (i.e., ERK1/2, p38, and JNK), all of which can be triggered by growth or stress factors, and thus play a vital part in signal transduction inside cells (10,11). Therefore, ERK1/2 and p38 appear to be closely correlated to the EMT process in PAAD cells.

The peptidylarginine deiminase (PAD) family comprises five members (i.e., PADI1–4, and 6) that are located within a highly organized gene cluster at 1p36.13 in humans and on the orthologous region of mouse chromosome 4, and study has found that PAD could post-translationally convert arginine residues into neutrally charged citrulline (12). Interestingly, recent studies have reported on the important role of PADI-mediated protein citrullination in various cancers (13). For example, Stadler et al. (14) reported that PADI4 overexpression inhibited breast cancer cell migration via its role in modulating EMT. While Xin et al. (15) reported that silencing PADI4 suppressed cell proliferation, cell cycle progression, and invasion in gastric cancer cells. PADI2 has been identified as a potential breast cancer biomarker and therapeutic target (16). The inhibition of PADI2 could enhance the anti-tumor effect of docetaxel in tamoxifen-resistant breast cancer cells (17). A recent report by Qin et al. (18) not only showed that PADI1 depletion suppressed tumorigenesis in triple negative breast cancer, but that these changes were correlated with the activated ERK1/2 and p38 MAPK signaling pathways. However, whether PADI1 regulates metastasis and the EMT in PAAD by modulating ERK1/2-p38 signaling pathway remains unclear.

In the present study, we first investigated the expression pattern and survival prognosis of PADI1 in PAAD patients. We then performed loss-of-function and gain-of-function assays to analyze the effects of PADI1 on PAAD cell migration, invasion, the EMT, and ERK1/2-p38 signaling. Additionally, rescue experiments were performed to determine whether PADI1 regulated PAAD cell migration and invasion by regulating the ERK1/2-p38 signaling pathway. We present the following article in accordance with the MDAR reporting checklist (available at https://dx.doi.org/10.21037/jgo-21-283).

Methods

Database analysis

The messenger RNA (mRNA) expression pattern of PADI1 in primary PAAD tissues and normal tissues examined in this study is available in the public repository of The Cancer Genome Atlas (TCGA; https://portal.gdc.cancer.gov/) database. Based on the survival data of PAAD patients obtained from TCGA database, we investigated the effect of PADI1 expression levels on PAAD patient survival rate using the Kaplan-Meier method with a log-rank test. The study was conducted in accordance with the Declaration of Helsinki (as revised in 2013).

Cell lines and treatments

A total of five PAAD cell lines (i.e., CFPAC-1, PANC-1, PL45, Bxpc-3, and HPAC) and human pancreatic nestin-expressing cells (hTERT-HPNE) were obtained from the Cell Resource Center of Shanghai Institute of Life Sciences, Chinese Academy of Sciences. All cell lines were cultured in the recommended conditions, and supplemented with 10% fetal bovine serum (FBS, Hyclone Co., Logan, UT, USA) in a humidified 5% carbon dioxide (CO₂) air incubator at 37 °C.

The small interfering RNA targeting PADI1 (siPADI1), the PADI1 mimics overexpression plasmid, and the corresponding controls were synthesized by Shanghai Genepharma, Co., Ltd. (Shanghai, China). For cell transfection, CFPAC-1, PANC-1, Bxpc-3, and HPAC cells were seeded into 6-well plates at a density of 1×10⁷ cells per well. The CFPAC-1 and HPAC cells were transfected with siPADI1 or siNC as the control, while PANC-1 and Bxpc-3 cells were transfected with PADI1 mimics or an empty vector in accordance with the instructions provided by Lipofectamine 3000 (Life Technology, MD, USA) for 48 h. For the validated experiments, CFPAC-1 and HPAC cells were treated with an ERK1/2 inhibitor (compound 27, Sigma-Aldrich, St. Louis, MO, USA) for 2 h, followed by siPADI1 transfection.

Quantitative real-time polymerase chain reaction (PCR)

The total RNA from the cell lines was isolated with a TRIzol reagent (Invitrogen, Carlsbad, CA, USA) and complementary DNA (cDNA) was synthesized from 2 μg of RNA with the PrimeScript^TM RT Reagent Kit (Takara Biotechnology, Dalian, China) in accordance with the manufacturer’s protocols. A quantitative real-time PCR was performed on the ABI StepOnePlus Real-time PCR system with SYBR Premix Ex Taq^TM (Takara, Dalian, China) according to the following cycling conditions: 95 °C for 30 sec, followed by 40 cycles of 95 °C for 5 sec, and 60 °C for 34 sec. The primer sequences used in this study were as follows: PADI1 forward: 5'-TTTCGGTGCTTTGAGTGGGTC-3' and reverse: 5'-TGTTGGCATATTTGTGGCAGG-3'; GAPDH forward: 5'-CACCCACTCCTCCACCTTTG-3' and reverse: 5'-CCACCACCCTGTTGCTGTAG-3'. The reactions were performed in triplicate, and relative fold changes in PADI1 mRNA expression were calculated using the 2^–ΔΔCT method.

Western-blot analysis

A total protein sample was extracted from the cell lines using a radioimmunoprecipitation assay (RIPA) buffer (Beyotime, Shanghai, China) and protein concentration was determined using a bicinchoninic acid protein assay kit (Beyotime). An equal amount of protein sample was separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride membranes (Millipore). The membranes were blocked with 5% non-fat milk for 2 h and incubated with primary antibodies against PADI1, E-cadherin, N-cadherin, Vimentin, p-ERK1/2, p38, p-p38, and GAPDH (all dilution: 1:1,000, Abcam, UK), after which they were incubated with a horseradish peroxidase-conjugated secondary antibody. The immunoreactive bands were then analyzed with an electrochemiluminescence system (GE Healthcare).

Immunofluorescence

Transfected cells from different groups were seeded into chamber slides and cultured overnight. The next day, the cells were fixed with 4% formaldehyde for 30 min and permeabilized with 0.5% Triton X-100. After being blocked with 1% bovine serum albumin for 30 min, the cells were incubated with PADI1 and p-ERK1/2 antibodies overnight at 4 °C. The cells were then washed with phosphate-buffered saline (PBS) and incubated with an appropriated secondary antibody. The nuclei were counterstained with 4',6‐diamidino-2-phenylindole (DAPI, Sigma). The stained images were observed and analyzed via immunofluorescence microscopy.

Wound-healing assay

In brief, the transfected cells were plated into 24-well plates and grown to 100 confluence. Afterwards, the cells from different groups were scratched with a 10 µL pipette tip (time 0). Next, the cells were washed with PBS to remove isolated cells, which were further incubated with a complete growth medium. After 24 h, images of cells that had migrated to the injured area were obtained using an inverted microscope.

Transwell assay

Cell migration and invasion ability were assessed by a 24-well Transwell chamber precoated without and with 1 mg/mL Matrigel (Millipore, MA, USA), respectively. Briefly, approximately 2.0×10⁴ transfected cells from different groups suspended in 100 µL of serum-free medium were inoculated in the upper chamber, and 500 µL of complete medium was added to the lower chamber as the chemoattractant. After 48 h, the cells that migrated into the lower chamber were fixed with 75% ethanol, stained with 0.5% crystal violet, and counted under a light microscope (BD Biosciences, Heidelberg, Germany).

Statistical analysis

The statistical data were analyzed with GraphPad prism 6 and expressed as means ± standard deviations (SDs) from three independent experiments. The paired Student’s t-test was applied to determine the statistical significance of the differences between the two groups. A one-way analysis of variance, followed by Dunnett’s test was used to assess the statistical significance of differences between multiple groups. Differences were considered statistically significant at P<0.05.

Results

PADI1 was overexpressed in PAAD tissues and associated with a poor survival prognosis

To elucidate the role of PADI1 in PAAD pathogenesis, we first searched the expression pattern of PADI1 in primary tumor and normal tissues derived from PAAD patients on TCGA database. As Figure 1A shows, PADI1 was found to be significantly overexpressed in PAAD tumor samples (n=178) compared to normal tissues (n=4). An analysis of TCGA datasets indicated that high PADI1 expression levels in PAAD samples were associated with a poor survival prognosis (see Figure 1B). To further validate the expression of PADI1, we performed a quantitative real-time PCR and western-blot analysis to determine the expression of PADI1 in PAAD cell lines. The results showed that the expression of PADI1 mRNA (see Figure 1C) and protein (see Figure 1D) was obviously upregulated in PAAD cell lines, including CFPAC-1, PANC-1, PL45, Bxpc-3, and HPAC, compared with the normal pancreatic cell line, hTERT-HPNE. Similarly, immunofluorescence staining of PADI1 confirmed the overexpression of PADI1 in PAAD cell lines compared with hTERT-HPNE cells (see Figure 1E).

Figure 1.

The expression of PADI1 and prognosis in PAAD patients. TCGA database was searched to investigate (A) the expression of PADI1 in tumor and normal tissues, and (B) the effects of PADI1 on the survival prognosis of PAAD patients. ***, P<0.001, compared with normal. (C) A quantitative real-time PCR and (D) western-blot analysis were applied to determine the expression of PADI1 mRNA and protein levels, respectively, in five PAAD cell lines (i.e., CFPAC-1, PANC-1, PL45, Bxpc-3, and HPAC) and the human pancreatic cell line, hTERT-HPNE. ***, P<0.001, compared with the hTERT-HPNE. (E) PADI1 was observed using immunofluorescence (400×) in PAAD cell lines and hTERT-HPNE. PADI1, peptidylarginine deiminase 1; PAAD, pancreatic ductal adenocarcinoma; TCGA, The Cancer Genome Atlas; PCR, polymerase chain reaction; mRNA, messenger RNA.

The knockdown of PADI1 suppressed PAAD cell migration and invasion, and activated the ERK1/2-p38 signaling pathway

To determine the functional role of PADI1 in PAAD cells, we first performed loss-of-function assays in CFPAN-1 and HPAC cells with relatively high PADI1 expression by transfection with siPADI1. As the PCR (see Figure 2A) and western-blot analysis (see Figure 2B) showed, the expression of PADI1 was significantly decreased in CFPAC-1 and HPAC cells after siPADI1 transfection compared to that of the control group. The results of the wound-healing assay indicated that the knockdown of PADI1 obviously suppressed the healing rate of CFPAN-1 and HPAC cells (see Figure 2C). The Transwell assay further demonstrated that the knockdown of PADI1 significantly suppressed the migration (see Figure 2D,E) and invasion (see Figure 2F,G) ability of both CFPAN-1 and HPAC cells. At the molecular level, the knockdown of PADI1 suppressed the EMT progress, as reflected by elevated E-cadherin expression and reduced N-cadherin and Vimentin expression, and upregulated p-ERK1/2 and p-38 expression in CFPAN-1 and HPAC cells (see Figure 2H). The immunofluorescence assay further confirmed the protein expression of p-ERK1/2 was increased after PADI1 knockdown in CFPAN-1 and HPAC cells (see Figure 2I).

Figure 2.

The knockdown of PADI1 suppressed PAAD cell migration and invasion, and activated the ERK1/2-p38 signaling pathway. CFPAC-1 and HPAC cells were transfected with siPADI1 or a control. (A) A quantitative real-time PCR and (B) western-blot analysis were performed to determine the expression of PADI1 mRNA and protein levels in the above two cell lines. (C) A wound-healing assay was performed to assess cell migration in the above two cell lines (40×). A Transwell assay was used to evaluate cell migration (D,E) and invasion (F,G) in the above two cell lines (100×, stained with crystal violet). Data are expressed as means ± SD from three independent experiments. ***, P<0.001, compared with the control. (H) The protein expression of E-cadherin, N-cadherin, Vimentin, p-ERK1/2, p38, and p-p38 was measured in the above two cell lines by a western-blot analysis. (I) PADI1 and p-ERK1/2 expression levels were observed using immunofluorescence (400×) in the above two cell lines. PADI1, peptidylarginine deiminase 1; PAAD, pancreatic ductal adenocarcinoma; PCR, polymerase chain reaction; mRNA, messenger RNA; SD, standard deviation.

The overexpression of PADI1 promoted PAAD cell migration, invasion and the ERK1/2-p38 signaling pathway

To further confirm the oncogenic role of PADI1 in PAAD cells, we selected PANC-1 and Bxpc-3 cells with relatively low PADI1 expression to transfect with the PADI1 overexpression plasmid. As Figure 3A,B shows, the expression of PADI1 was remarkedly upregulated after PADI1 mimics plasmid transfection compared to that of the empty vector in PANC-1 and Bxpc-3 cells. In contrast to PADI1 knockdown, we observed that the overexpression of PADI1 notably promoted the healing rate (see Figure 3C), cell migration (see Figure 3D,E) and invasion (see Figure 3F,G) ability in PANC-1 and Bxpc-3 cells. Similarly, PADI1 overexpression produced the opposite effects on the protein levels of E-cadherin, N-cadherin, Vimentin, p-ERK1/2, p38, and p-p38, as depicted by the western-blot analysis (see Figure 3H) and immunofluorescence assay (see Figure 3I).

Figure 3.

The overexpression of PADI1 promoted PAAD cell migration, invasion, and the ERK1/2-p38 signaling pathway. PANC-1 and Bxpc-3 cells were transfected with the PADI1 mimics overexpression plasmid or vector. (A) Quantitative real-time PCR and (B) western-blot analysis were applied to determine the expression of PADI1 mRNA and protein levels in the above two cell lines. (C) A wound-healing assay was performed to assess cell migration in the above two cell lines (40×). Transwell assay was used to evaluate cell migration (D,E) and invasion (F,G) in the above two cell lines (100×, stained with crystal violet). Data are expressed as means ± SD from three independent experiments. ***, P<0.001, compared with vector. (H) The protein expression of E-cadherin, N-cadherin, Vimentin, p-ERK1/2, p38, and p-p38 was measured in the above two cell lines by a western-blot analysis. (I) PADI1 and p-ERK1/2 expression levels were observed using immunofluorescence (400×) in the above two cell lines. PADI1, peptidylarginine deiminase 1; PAAD, pancreatic ductal adenocarcinoma; PCR, polymerase chain reaction; mRNA, messenger RNA; SD, standard deviation.

PADI1 affected the EMT process by regulating the ERK1/2-p38 signaling pathway in PAAD cells

Next, we examined whether PADI1 regulated PAAD cell migration and invasion by regulating the ERK1/2-p38 signaling pathway. The CFPAC-1 and HPAC cells were first transfected with siPADI1 and then treated with an ERK1/2 inhibitor (compound 27). As depicted by the wound-healing assay, the inhibition of p-ERK1/2 obviously promoted the cell healing rate in PADI1 silenced CFPAC-1 and HPAC cells (see Figure 4A). Similarly, the cell migration (see Figure 4B,C) and invasion (see Figure 4D,E) ability were enhanced in PADI1 silenced CFPAC-1 and HPAC cells after p-ERK1/2 inhibition. Further, we found that the inhibition of p-ERK1/2 in PADI1 silenced CFPAC-1, and HPAC cells activated the EMT process and suppressed the ERK1/2-p38 signaling pathway (see Figure 4F,G).

Figure 4.

PADI1 affected the EMT process by regulating the ERK1/2-p38 signaling pathway in PAAD cells. The CFPAC-1 and HPAC cells were first treated with an ERK1/2 inhibitor (compound 27) and then transfected with siPADI1. (A) A wound-healing assay was performed to assess cell migration in the above two cell lines (40×). A Transwell assay was used to evaluate cell migration (B,C) and invasion (D,E) in the above two cell lines (100×, stained with crystal violet). Data are expressed as means ± SD from three independent experiments. ***, P<0.001, compared with the control. (F) The protein expression of E-cadherin, N-cadherin, Vimentin, p-ERK1/2, p38, and p-p38 was measured in the above two cell lines by a western-blot analysis. (G) PADI1 and p-ERK1/2 expression levels were observed using immunofluorescence (400×) in the above two cell lines. PADI1, peptidylarginine deiminase 1; EMT, epithelial-mesenchymal transition; PAAD, pancreatic ductal adenocarcinoma; SD, standard deviation.

Discussion

We first observed that the expression of PADI1 was upregulated in PAAD tissues compared to normal tissues, and correlated with a poor survival prognosis in the TCGA database. It has been reported that the PADI enzyme family is linked to carcinogenesis and tumor progression (16,19,20). Similar to our findings, Qin et al. (18) searched the Oncomine and TCGA databases and found that the expression of PADI1 was upregulated in breast cancer patients, and positively correlated with triple negative breast cancer. Wang et al. (21) showed that PADI2, an androgen-repressed gene, is upregulated in castration-resistance prostate cancer. Liu et al. (22) found that PADI4 was overexpressed in lung cancer tissues and cell lines. Based on these findings, we speculated that PADI1 might be involved in regulating PAAD progression. A latest research found that PADI1 is up-regulated in a variety of cancer cell types (23), including melanoma, breast cancer, renal cell carcinoma and cervical carcinoma, which also proved PADI1 plays an important role in cancer cells.

We then investigated the functional role of PADI1 in PAAD in vitro. As expected, PADI1 knockdown suppressed the migration and invasion ability of PAAD cells, while PADI1 overexpression produced the opposite results. Our in vitro data suggested that PADI1 exerted oncogenic effects on metastasis in PAAD cells. At the molecular level, we observed that the knockdown of PADI1 elevated the expression of E-cadherin, p-ERK1/2, and p-38, and reduced N-cadherin and Vimentin expression in CFPAN-1 and HPAC cells. Conversely, PADI1 overexpression produced the opposite results on the above protein expression levels in PANC-1 and Bxpc-3 cells. ERK and p38 are two major MAPKs that have been extensively studied in mammals (24). In the present study, we showed that both p-ERK1/2 and p-38 were activated in PADI1 depleted cells. Thus, PADI1appears to have an inhibitory effect on the activation of ERK1/2-p38 signaling. Consistent with our data, PADI1 silencing reduced cell proliferation, suppressed the EMT, prevented metastasis, and activated the ERK1/2 and p38 MAPK signaling pathways in MDA-MB-231 cells (18). PADI4 promoted the EMT while the PADI4 inhibitor suppressed the EMT in osteosarcoma cells (25). Downregulating PADI2 suppressed the colony formation, proliferation, migration, and invasion of A2780 and SKOV3 cells (26). Conversely, the overexpression of PADI4 constrained the activity of EMT by suppressing ETS-domain containing protein (Elk1) expression, and inhibited the resistance of non-small cell lung cancer to gefitinib (27). From these reports, the different effects of PADIs in different tumor cells might mainly be ascribed to different tissue sources.

Further, we found evidence that ERK1/2 and p38 play distinct roles in the migration, invasion and EMT process in PADI1 depleted CFPAC-1 and HPAC cells. Our data described the activated migration, invasion, and EMT process following the inhibition of p-ERK1/2 in PADI1 silenced CFPAC-1 and HPAC cells, which indicated that ERK1/2 inactivation appears to be primarily responsible for the upregulation of N-cadherin and Vimentin, and the downregulation of E-cadherin expression in PADI1 knockdown cells. Currently, the precise role of MAPK signaling in regulating migration, invasion, and the EMT remains controversial. The epidermal growth factor downregulates E-cadherin expression via the production of hydrogen peroxide, the activation of p38 MAPK, and the upregulation of SNAIL in human ovarian cancer cells (28). Pirfenidone is able to attenuate the EMT and fibrosis in vivo and in vitro by antagonizing the MAPK pathway (29). Different cell types are no doubt the major reasons for these controversies.

Taken together, PADI1 exerted oncogenic effects on the PAAD cells in vitro by promoting cell migration and invasion and the EMT process, all of which might be associated with the inactivation of the ERK1/2-p38 signaling pathway. Our research indicates that targeting PADI1 in PAAD may represent a promising treatment.

Ethical Statement: The authors are accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved. The study was conducted in accordance with the Declaration of Helsinki (as revised in 2013).

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