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. 2021 Jun 14;49(W1):W641–W653. doi: 10.1093/nar/gkab384

Figure 2.

Figure 2.

Temporal Relations Table combines enables reconstruction of the transcription factor (TF) gene regulatory network. Diagram representation of algorithm separated into (i) temporal and TF information provided before Temporal Relations Table is built. (ii) TIMEOR combines five inputs, one of which is the experimentally determined interactions, to pass to TIMEOR's algorithm to (iii) reconstruct GRN (in table format). Activation is represented by +, repression is represented by –. Note we set the time frame of interaction within one time point (user question six to set adaptive default methods).