Table 1.

Comparison table showing the presence (tick) or absence (x) of various features (rows) available in Trips-Viz and similar tools (columns)

	Trips-Viz	RiboToolKit	SmProt	HRPDViewer	TranslatomeDB	RiboViz	RPFdb	OpenProt	GWIPS-VIZ	RiboGalaxy	RibostreamR
Web-Upload	✓	✓	✗	✗	✓	✗	✗	✓	✓	✓	✓
Batch-Uploading	✓	✓	✗	✗	✗	✗	✗	✓	✗	✗	✓
Local Install	✓	✓	✗	✗	✗	✓	✗	✗	✗	✓	✗
Pre-processed data	✓	✗	✓	✓	✓	✓	✓	✓	✓	✗	✗
Contamination checking	✓	✓	✗	✗	✗	✗	✗	✗	✗	✓	✓
Quality checking	✓	✓	✗	✗	✗	✓	✓	✗	✓	✓	✓
RPF visualisation	✓	✓	✗	✓	✓	✓	✓	✗	✓	✓	✓
RNA-Seq visualisation	✓	✗	✗	✗	✓	✓	✗	✗	✓	✓	✓
Mismatch detection	✓	✗	✗	✗	✗	✗	✗	✗	✗	✗	✗
Visualization of subcodon profiles	✓	✗	✗	✗	✗	✗	✗	✗	✗	✓	✓
Nucleotide sequence retrieval	✓	✗	✓	✗	✗	✗	✗	✗	✓	✓	✗
Codon Occupancy	✗	✓	✗	✗	✗	✗	✗	✗	✓	✓	✗
Pause detection	✗	✓	✗	✗	✗	✗	✗	✗	✗	✗	✗
Codon Frequency	✓	✓	✗	✗	✗	✗	✗	✗	✗	✗	✗
Meta-Codon plots	✗	✓	✗	✗	✗	✗	✗	✗	✗	✗	✗
mRNA expression	✓	✓	✗	✗	✓	✓	✗	✗	✗	✓	✓
RPF expression	✓	✓	✗	✓	✓	✓	✓	✗	✗	✓	✓
Translation efficiency analysis	✓	✓	✗	✗	✓	✓	✗	✗	✗	✓	✓
Differential translation analysis	✓	✓	✗	✗	✓	✗	✗	✗	✗	✓	✓
Translated ORF detection	✓	✓	✓	✗	✗	✗	✓	✓	✗	✗	✗
Proteomics Analysis	✓	✗	✓	✗	✗	✗	✗	✓	✗	✗	✗
GO/Pathway analysis	✗	✓	✗	✗	✓	✗	✗	✗	✗	✗	✗
MetaGene Plots	✓	✓	✗	✗	✗	✓	✓	✗	✗	✓	✓
Reproducibility between replicates	✓	✗	✗	✗	✓	✗	✗	✗	✗	✗	✗