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Databases and search programs used by pLannotate to identify plasmid features
| Database | Number of features | Search program | E-value cutoff | Percent identity cutoff |
|---|---|---|---|---|
| GenoLIB (Compiled 10/29/20) | 13,240 | BLASTN | 1 | 98% |
| FPbase (Downloaded 9/2/20) | 762 | DIAMOND | 0.001 | 98% |
| Swiss-Prot (Release 2020_05, Annotation Score ≥3) | 547,899 | DIAMOND | 0.001 | 10% |
| Rfam (Release 14.5) | 3,940 | Infernal | 1 | N/A |
