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. 2021 Jun 22;12(3):e00391-21. doi: 10.1128/mBio.00391-21

TABLE 1.

Transcriptome data of putative salicylate hydroxylases from A. niger induced by p-hydroxybenzoic acid, protocatechuic acid, p-coumaric acid, or caffeic acida

Gene identifier p-Hydroxybenzoic acid
Protocatechuic acid
p-Coumaric acid
Caffeic acid
No carbon source (FPKM)
FPKM FC P value FPKM FC P value FPKM FC P value FPKM FC P value
NRRL3_04659 42.6 2.74 0.00 484.2 6.16 0.00 77.0 3.75 0.00 752.9 7.01 0.00 6.6
NRRL3_06695 16.4 0.88 0.04 105.1 3.45 0.00 27.8 1.78 0.00 21.5 1.43 0.00 9.5
NRRL3_09897 7.0 0.14 0.83 33.6 2.25 0.00 10.1 0.78 0.06 32.5 2.43 0.00 6.9
NRRL3_09295 58.5 2.32 0.00 42.6 1.81 0.00 64.2 2.61 0.00 54.2 2.38 0.00 12.6
NRRL3_08287 227.0 4.30 0.00 28.1 1.28 0.00 116.3 3.51 0.00 26.7 1.43 0.00 12.1
NRRL3_00043 3418.6 1.27 0.15 3080.5 1.06 0.26 6491.6 2.19 0.00 2136.2 0.80 0.35 1384.4
NRRL3_09723 20.4 0.84 0.01 20.3 0.78 0.03 48.3 2.22 0.00 27.4 1.43 0.00 12.2
a

Values for genes induced (fragments per kilobase per million [FPKM] ≥ 10, fold change [FC] ≥ 2, P value ≤ 0.01) under these conditions are highlighted in bold. Fold change (log2 values) and P values were calculated using DeSeq2 (65).