TABLE 1.
Transcriptome data of putative salicylate hydroxylases from A. niger induced by p-hydroxybenzoic acid, protocatechuic acid, p-coumaric acid, or caffeic acida
| Gene identifier |
p-Hydroxybenzoic acid |
Protocatechuic acid |
p-Coumaric acid |
Caffeic acid |
No carbon source (FPKM) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FPKM | FC | P value | FPKM | FC | P value | FPKM | FC | P value | FPKM | FC | P value | ||
| NRRL3_04659 | 42.6 | 2.74 | 0.00 | 484.2 | 6.16 | 0.00 | 77.0 | 3.75 | 0.00 | 752.9 | 7.01 | 0.00 | 6.6 |
| NRRL3_06695 | 16.4 | 0.88 | 0.04 | 105.1 | 3.45 | 0.00 | 27.8 | 1.78 | 0.00 | 21.5 | 1.43 | 0.00 | 9.5 |
| NRRL3_09897 | 7.0 | 0.14 | 0.83 | 33.6 | 2.25 | 0.00 | 10.1 | 0.78 | 0.06 | 32.5 | 2.43 | 0.00 | 6.9 |
| NRRL3_09295 | 58.5 | 2.32 | 0.00 | 42.6 | 1.81 | 0.00 | 64.2 | 2.61 | 0.00 | 54.2 | 2.38 | 0.00 | 12.6 |
| NRRL3_08287 | 227.0 | 4.30 | 0.00 | 28.1 | 1.28 | 0.00 | 116.3 | 3.51 | 0.00 | 26.7 | 1.43 | 0.00 | 12.1 |
| NRRL3_00043 | 3418.6 | 1.27 | 0.15 | 3080.5 | 1.06 | 0.26 | 6491.6 | 2.19 | 0.00 | 2136.2 | 0.80 | 0.35 | 1384.4 |
| NRRL3_09723 | 20.4 | 0.84 | 0.01 | 20.3 | 0.78 | 0.03 | 48.3 | 2.22 | 0.00 | 27.4 | 1.43 | 0.00 | 12.2 |
Values for genes induced (fragments per kilobase per million [FPKM] ≥ 10, fold change [FC] ≥ 2, P value ≤ 0.01) under these conditions are highlighted in bold. Fold change (log2 values) and P values were calculated using DeSeq2 (65).