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. 2021 May 11;12(3):e03705-20. doi: 10.1128/mBio.03705-20

TABLE 1.

Mycoviruses identified in B. cinerea samplesa

Virus taxon Accession no. Genome segment Genome polarityb Conserved domain Name Isolate identifier Contig identifier Length (bp) Length (aa) mol wt (kDa) E value First hit (nr NCBI) BLASTx results Identity (%)
dsRNA viruses MN617031 RNA1 dsRNA RdRp Botrytis cinerea mycovirus 3 (BcMyV3) BCS6 BCS6_TRINITY_DN7828_c0_g1_i1 2,024 607 69.28 0.0 KC549809 C. parasitica bipartite mycovirus 1 60.00
MN617032 RNA2 HP BCS4 BCS4_TRINITY_DN4111_c0_g1_i1 1,780 307 33.15 4,00E-78 KC549809 C. parasitica bipartite mycovirus 1 46.47
Botybirnavirus MN627274 RNA1 dsRNA RdRp Botrytis cinerea botybirnavirus 2 (BcBV2) BCI11 BCS17_TRINITY_DN61_c0_g2_i1 6,038 1,831 205 0.0 MH684534 B. dothidea botybirnavirus 1 53.16
MN627275 RNA2 HP BCS17 BCS17_TRINITY_DN61_c0_g1_i1 5,936 1,801 200.3 0.0 MH321500 B. cinerea botybirnavirus 1 32.53
Botybirnavirus MN954879 RNA1 dsRNA RdRp Botrytis porri botybirnavirus 1 (BpBV1) BCS16 BCS16_TRINITY_DN64_c0_g2_i1 6,201 1,902 213.2 0.0 JF716350 B. porri botybirnavirus 1 97.32
MN954880 RNA2 HP BCS16 BCS16_TRINITY_DN64_c0_g1_i1 5,802 1,788 197.47 0.0 JF716351 97.48
dsRNA viruses MN617757 RNA1 dsRNA RdRp Botrytis cinerea mycovirus 5 (BcMyV5) BCI6 BCI6_Contig7 2,184 675 76.31 0.0 KX380787 F. graminearum dsRNA mycovirus 5 83.44
MN617755 RNA2 dsRNA HP Botrytis cinerea mycovirus 5 (BcMyV5) BCI7 BCI7_TRINITY_DN6668_c0_g1_i2 1,522 316 34.75 4E–154 KX380788 73.84
MN617756 RNA2 dsRNA HP Botrytis cinerea mycovirus 5 (BcMyV5) BCI6 BCI6_TRINITY_DN3037_c0_g1_i2 1,433 344 38.11 1E–148 KX380788 66.87
Partitiviridae MN954881 RNA1 dsRNA RdRp Botryotinia fuckeliana partitivirus 1 (BfPV1) BCS3 BCS3_TRINITY_DN4616_c0_g1_i1 1,780 540 62.68 0.0 AM491609 B. fuckeliana partitivirus 1 99.63
MN954882 RNA2 CP BCI12 BCI12_TRINITY_DN10399_c0_g1_i1 1,597 436 47.11 0.0 AM491610 95.64
Quadrivirus MN954886 RNA1 dsRNA HP Botrytis cinerea mycovirus 4 (BcMyV4) BCS14 BCS14_TRINITY_DN1846_c0_g1_i1 4,983 1,592 177.32 0.0 MH347279 B. cinerea RNA Virus 2 90.76
MN954885 RNA3 RdRp BCS14 BCS14_Contig45 4,267 1,364 152.35 0.0 MH347280 95.31
MN617034 RNA4 HP BCS14 BCS14_TRINITY_DN1605_c0_g1_i1 3,944 1,128 85.78 0.0 MH347281 96.79
MN617035 RNA2 Structural protein BCS13 BCS13_TRINITY_DN3888_c0_g1_i1 4,401 1,407 154.6 9.00E–07 AB620062 R. necatrix quadrivirus 1 23.63
Victorivirus MH347278 RNA dsRNA CP incomplete Botrytis cinerea victorivirus 1 (BcVV1) BCS15 BCS15_TRINITY_DN531_c0_g3_i1 2,539 785 85.73 0.0 MH347278 B. cinerea victorivirus 1 90.81
Victorivirus MN617038 RNA dsRNA RdRp Botrytis cinerea victorivirus 2 (BcVV2) BCS11 BCS11_TRINITY_DN2674_c0_g1_i1 5,186 807 85.78 0.0 AM491608 B. fuckeliana totivirus 1 85.08
CP 838 92.51 0.0 MH347278 B. cinerea victorivirus 1 91.43
Victorivirus MN617037 RNA dsRNA RdRp Botrytis cinerea victorivirus 2-BCS9 BCS9 BCS9_TRINITY_DN1144_c0_g1_i1 5,184 838 92.79 0.0 AM491608 B. fuckeliana totivirus 1 85.44
CP 807 85.82 0.0 93.59
Victorivirus MN839444 RNA dsRNA RdRp Botrytis cinerea victorivirus 2-BCS14 BCS14 BCS14_TRINITY_DN8324_c0_g1_i1 5,173 838 92.39 0.0 AM491608 B. fuckeliana totivirus 1 85.92
CP 807 85.79 0.0 93.86
Victorivirus MN839445 RNA dsRNA RdRp Botrytis cinerea victorivirus 2-BCS12 BCS12 BCS12_TRINITY_DN1502_c0_g1_i1 5,201 838 92.53 0.0 AM491608 B. fuckeliana totivirus 1 86.16
CP 807 85.78 0.0 93.32
Victorivirus MN839446 RNA dsRNA RdRp Botrytis cinerea victorivirus 3-BCS17 BCS17 BCS17_TRINITY_DN10534_c0_g1_i1 5,173 838 92.35 0.0 AM491608 B. fuckeliana totivirus 1 86.16
CP 807 85.79 0.0 94.50
Victorivirus MN839447 RNA dsRNA RdRp Botrytis cinerea victorivirus 2-BCS8 BCS8 BCS8_TRINITY_DN1217_c0_g1_i1 5,177 838 92.76  0.0 AM491608 B. fuckeliana totivirus 1 85.08
CP 807 85.52 0.0 93.33
Victorivirus MN839448 RNA dsRNA RdRp Botrytis cinerea victorivirus 2-BCI8 BCS8 BCS8_TRINITY_DN1217_c0_g2_i1 4,360 838 92.7 0.0 AM491608 B. fuckeliana totivirus 1 85.68
CP 538 57.24 0.0 92.92
Victorivirus MN839449 RNA dsRNA RdRp Botrytis cinerea victorivirus 3 (BcVV3) BCS9 BCS9_TRINITY_DN1144_c0_g1_i2 5,205 838 92.34 0.0 AM491608 B. fuckeliana totivirus 1 86.40
CP 807 85.73 0.0 MH347278 B. cinerea victorivirus 1 91.20
Victorivirus MN839450 RNA dsRNA RdRp Botrytis cinerea victorivirus 3-BCS13 BCS13 BCS13_TRINITY_DN4062_c0_g1_i1 5,178 838  92.28 0.0 AM491608 B. fuckeliana totivirus 1 85.68
CP 807 85.67 0.0 MH347278 B. cinerea victorivirus 1 91.82
Victorivirus MN839451 RNA dsRNA RdRp Botrytis cinerea victorivirus 3-BCS16 BCS16 BCS16_TRINITY_DN5_c0_g1_i2 5,171 838 92.42 0.0 AM491608 B. fuckeliana totivirus 1 85.68
CP 807 85.69 0.0 MH347278 B. cinerea victorivirus 1 91.45
dsRNA virus LN827952 RNA dsRNA RdRp Sclerotinia sclerotiorum dsRNA mycovirus L (SsNsV‐L) BCS12 BCS12_TRINITY_DN3578_c0_g1_i1 8,914 1,338 146.33 0.0 LN827952 S. sclerotiorum dsRNA mycovirus L 96.94
HP 1,306 144.52 0.0 92.87
Gammapartitivirus MN954883 RNA2 dsRNA CP Botrytis cinerea partitivirus 3 (BcPV3) BCS4 BCS4_TRINITY_DN5031_c0_g1_i1 1,537 433 45.88 0.0 MF444213 S. sclerotiorum partitivirus 2 92.84
MN954884 RNA1 RdRp BCS4 BCS4_TRINITY_DN10017_c0_g1_i1 1,762 539 62.67 0.0 MF444214 S. sclerotiorum partitivirus 3 99.64
Alphavirus MN625250 RNA ssRNA(+) Polyprotein Botrytis cinerea alpha-like virus 1 (BcAV1) BCI2 BCI2_Contig12 8,008 1,975 219.85 1E–09 MH766488 S. rolfsii alphavirus-like virus 1 35
HP1 185 20.74     No significant similarity found  
HP2 230 25.52     No significant similarity found  
Flexiviridae MN625248 RNA ssRNA(+) RdRp Botrytis cinerea flexivirus 1 (BcFlV1) BCI5 BCI5_contig11 13,985 4,619 439.58 0.0 MK584823 L. chartarum flexivirus 1 33.94
Deltaflexivirus MN625249 RNA ssRNA(+) RdRp Botrytis cinerea deltaflexivirus 1 (BcDFV1) BCS16 BCS16_TRINITY_DN4173_c0_g1_i1 4,869 1,124 124.95 0.0 KT598226 Soybean leaf-associated mycoflexivirus 1 41.32
HP   193 20.5 4.00E–08 KT598226 28.41
Deltaflexivirus MN954874 RNA ssRNA(+) RdRp Sclerotinia sclerotiorum deltaflexivirus 2 (SsDFV2) BCS1 BCS1_TRINITY_DN9681_c0_g1_i1 6,628 2,086 232.66 0.0 MH299810 S. sclerotiorum deltaflexivirus 2 92.71
Umbravirus MN625251 RNA ssRNA(+) RdRp Botrytis cinerea umbra-like virus 1 (BcUV1) BCS1 BCS1_TRINITY_DN12780_c0_g1_i1 3,865 519 58.3 0.0 KC601995 S. sclerotiorum umbra-like virus 1 50.77
HP 338 36.7 8E−26
Umbravirus MT230951 RNA ssRNA(+) RdRp Sclerotinia sclerotiorum umbra-like virus 2 (SsUV2) BCS2 BCS2_TRINITY_DN3109_c0_g1_i1 4,752 344 38.2 0.0 MF444273 S. sclerotiorum umbra like virus 2 95.78
RaP 528 59.83  
Umbravirus MT230952 RNA ssRNA(+) RdRp Sclerotinia sclerotiorum umbra-like virus 3 (SsUV3) BCS17 BCS17_TRINITY_DN25_c0_g1_i4 3,981 417 46.42 0.0 MF444274 S. sclerotiorum umbra like virus 3 98.17
RaP 513 58.19 0.0 96.40
Endornaviridae MN617758 RNA ssRNA(+) Polyprotein Botrytis cinerea endornavirus 2 (BcEV2) BCI1 BCI1_TRINITY_DN2153_c0_g1_i2 13,581 4,501 504.55 0.0 MG255170 S. minor endornavirus 1 87.84
Endornaviridae MN839443 RNA ssRNA(+) Polyprotein Botrytis cinerea endornavirus 3 (BcEV3) BCI11 BCI11_TRINITY_DN9384_c0_g1_i1 13,582 4,501 504.6 0.0 MG255170 S. minor endornavirus 1 88.20
Fusarivirirus MN617762 RNA ssRNA(+) RdRp Botrytis cinerea fusarivirus 3 (BcFV3) BCS15 BCS15_TRINITY_DN2871_c0_g2_i1 8,354 1,657 189.39 0.0 MK558256 R. solani fusarivirus 2 34.27
HP 704 78.37 0.0 45.87
Fusarivirirus MN617763 RNA ssRNA(+) RdRp Botrytis cinerea fusarivirus 4 (BcFV4) BCI12 BCI12_TRINITY_DN9205_c0_g1_i1 8,349 1,657 187.72 0.0 MK558256 R. solani fusarivirus 2 36.86
HP 692 77.59 0.0 44.76
Fusarivirirus MN617764 RNA ssRNA(+) RdRp Botrytis cinerea fusarivirus 5 (BcFV5) BCS3 BCS3_TRINITY_DN2128_c0_g1_i1 6,313 1,542 173.42 0.0 MK279504 R. firma fusarivirus 1 51.02
HP 494 55.55 1.00E–13 26.14
Fusarivirirus MN617765 RNA ssRNA(+) RdRp Botrytis cinerea fusarivirus 6 (BcFV6) BCS8 BCS8_TRINITY_DN9299_c0_g1_i1 6,301 1,542 173.52 0.0 MK279504 R. firma fusarivirus 1 51.58
HP 491 55.22 2.00E–16 23.66
Fusarivirirus MN617766 RNA ssRNA(+) RdRp Botrytis cinerea fusarivirus 7 (BcFV7) BCS13 BCS13_Contig13 7,881 1,675 193.08 0.0 KP842791 S. sclerotiorum fusarivirus 1 68.25
HP 601 69.03 0.0 55.15
Hypovirus MN617169 RNA ssRNA(+) Polyprotein Botrytis cinerea hypovirus 2 (BcHV2) BCS3 BCS3_TRINITY_DN9124_c0_g1_i1 13,722 4,199 479.4 0.0 KP900893 M. phaseolina hypovirus 1 42.44
Hypovirus MN617170 RNA ssRNA(+) Polyprotein Botrytis cinerea hypovirus 3 (BcHV3) BCI1 BCI1_Contig3 10,863 3,042 347.55 0.0 MF444220 S. sclerotiorum hypovirus 1-A 94.18
Hypovirus MN617171 RNA ssRNA(+) ORF2 Botrytis cinerea hypovirus 4 (BcHV4) BCS17 BCS17_TRINITY_DN134_c0_g2_i1 17,631 3,345 380.34 0.0 MK558259 R. solani hypovirus 1 37.00
ORF1 1,023 113.62 0.0 KJ561218 S. sclerotiorum hypovirus 2 58.30
Hypovirus MT157414 RNA ssRNA(+) RdRp Botrytis cinerea hypovirus 5 (BcHV5) BCI10 BCI10_TRINITY_DN5057_c0_g1_i1 15,353 4,856 547.55 0.0 MH347276 S. sclerotiorum hypovirus 2 93.33
Hypovirus MH347277 RNA ssRNA(+) Polyprotein Botrytis cinerea hypovirus 1 (BcHV1) BCS11 BCS11_Contig10 10,483 2,965 336.61 0.0 MH347277 B. cinerea hypovirus 1 98.25
Hypovirus MG554634 RNA ssRNA(+) HP Botrytis cinerea hypovirus 1 satellite-like RNA BCS12 BCS12_Contig3 4,366 670 74.04 0.0 MG554634 B. cinerea hypovirus 1 satellite like RNA 97.91
Hypovirus MF444221 RNA ssRNA(+) HP Sclerotinia sclerotiorum hypovirus 1 A (SsHV1A) BCI8 BCI8_Contig1 4,578 647 71.64 0.0 MF444221 S. sclerotiorum hypovirus 1 A 94.91
Narnavirus MN619795 RNA 1 ssRNA(+) RdRp Botrytis cinerea binarnavirus 1 (BcBNV1) BCI12 BCI12_TRINITY_DN4441_c0_g2_i1 2,572 825 92.66 0.0 MK584836 A. tenuissima binarnavirus 1 47.16
MT711186 RNA2 HP BCI12_TRINITY_DN4441_c0_g1_i1 2,288 716 79.99     B. cinerea narnavirus 2 RNA2 49.82
Narnavirus MN619796 RNA 1 ssRNA(+) RdRp Botrytis cinerea binarnavirus 2 (BcBNV2) BCS14 BCS14_TRINITY_DN413_c0_g1_i1 2,554 813 90.85  0.0 MK584836 A. tenuissima narnavirus 1 54.98
MT119676 RNA 2 HP BCS14_TRINITY_DN413_c0_g2_i1 2,289 731 82.58 0.0001 MF176348 Wilkie narna-like virus 2 27.56
Narnavirus MN619797 RNA 1 ssRNA(+) RdRp Botrytis cinerea binarnavirus 3 (BcBNV3) BCS8 BCS8_TRINITY_DN5048_c1_g1_i1 2,553 823 92.44 0.0 MK584836 A. tenuissima narnavirus 1 46.81
MT711185 RNA 2 HP BCS8_TRINITY_DN10205_c0_g1 2,282 712 80.03     B. cinerea binarnavirus 2 RNA2 50.29
Narnavirus MN619798 RNA ssRNA(+) RdRp Botrytis cinerea narnavirus 4 (BcNV4) BCS1 BCS1_TRINITY_DN5229_c0_g1_i1 2,471 739 84.59 2E−22 LC150604 F. poae narnavirus 1 26.03
Narnavirus MN619799 RNA 1 ssRNA(+) RdRp Botrytis cinerea binarnavirus 5 (BcBNV5) BCS8 BCS8_TRINITY_DN967_c0_g1_i1 2,411 754 85.58 0.0 MK584835 C. tenuissimum narnavirus 1 63.01
MT711187 RNA 2 HP BCS8_TRINITY_DN9735_c0_g1_i1 2,253 707 80.18     B. cinerea binarnavirus 2 RNA2 47.28
Botoulivirus MT119674 RNA ssRNA(+) RdRp Botrytis ourmia-like virus (BOLV) BCS15 BCS15_TRINITY_DN11430_c0_g1_i1 2,885 722 82.04 0.0 LN827956 Botrytis ourmia-like virus 96.26
Botourmiaviridae MN605467 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 1 (BcOLV1) BCS12 BCS12_TRINITY_DN83_c0_g1_i10 5,185 954 107.84 1.00E−109 MK584843 P. minimum ourmia-like virus 1 41.36
Botourmiaviridae MN605468 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 2 (BcOLV2) BCS12 BCS12_Contig6 3,561 909 102.89 1.00E−120 MK584843 P. minimum ourmia-like virus 1 45.07
Botourmiaviridae MN605469 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 3 (BcOLV3) BCS8 BCS8_TRINITY_DN11_c0_g1_i2 3,286 946 107.05 3E–120 MN532673 P. minimum ourmia-like virus 1 43.85
Botourmiaviridae MN605470 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 4 (BcOLV4) BCI10 BCI10_TRINITY_DN4356_c0_g1_i1 2,861 735 83.18 0.0 LN827955 Botrytis ourmia-like virus 67.27
Botourmiaviridae MN605471 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 5 (BcOLV5) BCI5 BCI5_TRINITY_DN19_c0_g1_i1 3,376 738 83.83  9,00E-42 MK584840 C. uredinicola ourmiavirus 1 33.15
Botourmiaviridae MN605472 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 6 (BcOLV6) BCS1 BCS1_TRINITY_DN27_c0_g1_i1 2,697 692 78.81 0.0 MK584845 A. sclerotigenum ourmia-like virus 1 51.83
Botourmiaviridae MN605473 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 7 (BcOLV7) BCS14 BCS14_TRINITY_DN363_c0_g1_i1 2,100 515 59.09 3.00E–162 MK584845 A. sclerotigenum ourmia-like virus 1 51.20
Botourmiaviridae MN605474 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 8 (BcOLV8) BCS3 BCS3_TRINITY_DN27_c0_g2_i1 2,706 692 78.7 0.0 MK584845 A. sclerotigenum ourmia-like virus 1 51.63
Botourmiaviridae MN605475 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 9 (BcOLV9) BCI10 BCI10_TRINITY_DN8574_c0_g1_i1 2,941 804 90.92 0.0 MK584839 P. sumatrense ourmia-like virus 1 49.92
Botourmiaviridae MN605476 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 10 (BcOLV10) BCS1 BCS1_TRINITY_DN3465_c0_g1_i1 2,430 615 70.15 2.00E–126 LC413502 P. oryzae ourmia-like virus 2 62.20
Botourmiaviridae MN605477 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 11 (BcOLV11) BCI7 BCI7_TRINITY_DN2190_c0_g1_i1 2,850 671 76.18 0.0 KP900929 S. sclerotiorum ourmia-like virus 2 53.92
Botourmiaviridae MN605478 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 12 (BcOLV12) BCI10 BCI10_TRINITY_DN3618_c0_g1_i1 2,898 688 78.81 2E–159 KP900929 S. sclerotiorum ourmia-like virus 2 44.53
Botourmiaviridae MN605479 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 13 (BcOLV13) BCS2 BCS2_Contig15 2,877 710 81.33 1E–132 KP900929 S. sclerotiorum ourmia-like virus 2 43.09
Botourmiaviridae MN605480 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 14 (BcOLV14) BCS15 BCS15_TRINITY_DN11704_c0_g1_i1 2,484 635 73.25  2.00E–128 MK584842 E. nigrum ourmia-like virus 1 40.29
Botourmiaviridae MN605481 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 15 (BcOLV15) BCS2 BCS2_TRINITY_DN470_c0_g2_i2 2,428 645 73.9 1.00E–128 MK584842 E. nigrum ourmia-like virus 1 39.94
Botourmiaviridae MN605482 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 16 (BcOLV16) BCS12 BCS12_TRINITY_DN3_c0_g1_i4 2,493 650 73.52 2.00E–126 KP900929 S. sclerotiorum ourmia-like virus 2 39.87
Botourmiaviridae MN605483 RNA ssRNA(+) RdRp Botrytis cinerea ourmia-like virus 17 (BcOLV17) BCI2 BCI2_TRINITY_DN5291_c0_g1_i1 2,837 663 74.78 2.00E–132 MK584842 E. nigrum ourmia-like virus 1 40.69
Botourmiaviridae MT119675 RNA ssRNA(+) RdRp P. oryzae ourmia-like virus 2 (PoOLV2) BCI6 BCI6_TRINITY_DN4570_c0_g1_i1 1,320 366 41.17 0.0 LC413502 P. oryzae ourmia like virus 2 93.99
Mitovirus MT119677 RNA ssRNA(+) RdRp Botrytis cinerea mitovirus 1 (BcMV1) BCS1 BCS1_TRINITY_DN4879_c0_g1_i1 2,788 738 83.74 0.00 LN827940 B. cinerea mitovirus 1 97.02
Mitovirus MN617165 RNA ssRNA(+) RdRp Botrytis cinerea mitovirus 2 (BcMV2) BCS8 BCS8_Contig13 2,502 710 82.38 0.0 LN827945 B. cinerea mitovirus 2 96.76
Mitovirus MN617166 RNA ssRNA(+) RdRp Botrytis cinerea mitovirus 3 (BcMV3) BCS16 BCS16_Contig12_len = 2977 2,977 786 89.27 0.0 LN827942 B. cinerea mitovirus 3 94.53
Mitovirus MN954875 RNA ssRNA(+) RdRp Botrytis cinerea mitovirus 4 (BcMV4) BCS16 BCS16_Contig23 2,709 731 85.61 0.0 LN827947 B. cinerea mitovirus 4 93.71
Mitovirus MN617167 RNA ssRNA(+) RdRp Botrytis cinerea mitovirus 5 (BcMV5) BCS17 BCS17_TRINITY_DN132_c0_g1_i8 2,721 731 85.51 0.00 LN827947 B. cinerea mitovirus 4 88.24
Mitovirus MN625252 RNA ssRNA(+) RdRp Botrytis cinerea mitovirus 6 (BcMV6) BCI1 BCI1_TRINITY_DN10328_c0_g1_i1 2,519 710 80.87 0.00 MN035976 Mitovirus sp. 48.19
Mitovirus MN617168 RNA ssRNA(+) RdRp Botrytis cinerea mitovirus 7 (BcMV7) BCI5 BCI5_TRINITY_DN3722_c0_g1_i1 2,705 731 85.46 0.00 KT365895 Sclerotinia nivalis mitovirus 1 86.32
Mitovirus MN625253 RNA ssRNA(+) RdRp Botrytis cinerea mitovirus 8 (BcMV8) BCS17 BCS17_TRINITY_DN76_c0_g1_i1 2,362 713 83.07 0.00 MN033004 Mitovirus sp. 50.34
Mitovirus MN954876 RNA ssRNA(+) RdRp Sclerotinia sclerotiorum mitovirus 3 (SsMV3) BCI2 BCI2_TRINITY_DN28_c0_g1_i4 2,974 607 68.52 0.0 LN827949 S. sclerotiorum mitovirus 3 96.66
Mitovirus MN954877 RNA ssRNA(+) RdRp Sclerotinia sclerotiorum mitovirus 4 (SsMV4) BCS16 BCS16_Contig24 2,737 731 85.67 0.0 JX401538 S. sclerotiorum mitovirus 4 96.22
Mitovirus MT089704 RNA ssRNA(+) RdRp Botrytis cinerea mitovirus 9 (BcMV9) BCS4 BCS4_TRINITY_DN9446_c0_g1_i1 2,720 719 82.74 0.0 LN827948 Grapevine-associated narnavirus 1 96.38
Mycoflexivirus LN827953 RNA ssRNA(+) RdRp Botrytis virus F (BVF) BCI10 BCI10_Contig9 7,004 2,002 224.31 0.0 LN827953 Botrytis virus F 98.10
CP 332 8.3 1.00E–157 LN827949 97.25
Tymoviridae MN954873 RNA ssRNA(+) RdRp Botrytis cinerea mycotymovirus 1 (BcMTV1) BCS15 BCS15_TRINITY_DN310_c0_g1_i1 7,293 2,347 261.25 0.0 MF444267 S. sclerotiorum mycotymovirus 1 94.90
Phenuiviridae MN617081 RNA1 ssRNA(–) RdRp Botrytis cinerea bocivirus 1 (BcBV1) BCS15 BCS15_Contig41 6,729 2,211 253.98 0.0 KY781184 Watermelon crinkle leaf-associated virus 1 39.58
MN617080 RNA2 ORF2 BCS15_TRINITY_DN307_c0_g1_i1 1,646 470 52.79 1E–148 MG256515 Laurel Lake virus 51.30
MN617079 RNA3 CP BCS15_TRINITY_DN360_c0_g1_i1 1,284 356 39.21 7E−55 MK689373 Citrus virus A 35.26
ssRNA negative-strand virus MN617149 RNA ssRNA(–) RdRp Botrytis cinerea negative-stranded RNA virus 2 (BcNSRV2) BCS16 BCS16_TRINITY_DN9775_c0_g3_i1 6,510 2,135 245.02 0.0 MK584854 Coniothyrium diplodiella negative-stranded RNA virus 1 52.77
Mymonaviridae MN617150 RNA ssRNA(–) RdRp (gp5) Botrytis cinerea negative-stranded RNA virus 3 (BcNSRV3) BCS11 BCS11_Contig19 9,875 1,934 221.11 0.0 KC601997 S. sclerotiorum negative-stranded RNA virus 3 56.07
gp2 410 45.65 4.00E–111 46.02
HP (=gp6) 220 25.35 4.00E−05 KJ186782 S. sclerotiorum negative-stranded RNA virus 1 30.83
gp1 285 31.71 1.00E–13 KC601997 S. sclerotiorum negative-stranded RNA virus 3 25.80
Mymonaviridae MN617151 RNA ssRNA(–) RdRp Botrytis cinerea negative-stranded RNA virus 4 (BcNSRV4) BCS12 BCS12_TRINITY_DN161_c0_g1_i1 9,211 1,949 223.88 0.0 MF444280 S. sclerotiorum negative-stranded RNA virus 3-A 50.05
HP 180 20.42 1.00E−05 KJ186782 S. sclerotiorum negative-stranded RNA virus 1 31.58
gp2 385 43.28 7.00E−108 KC601997 S. sclerotiorum negative-stranded RNA virus 3 43.86
HP2 245 27.23     No significant similarity found  
Mymonaviridae MN617152 RNA ssRNA(–) RdRp Botrytis cinerea negative-stranded RNA virus 5 (BcNSRV5) BCS15 BCS15_TRINITY_DN100_c0_g1_i1 9,817 1,953 221.91 0.0 MF444283 S. sclerotiorum negative-stranded RNA virus 5 81.13
HP1 284 284 31.73     No significant similarity found  
HP2 394 394 43.71     No significant similarity found  
HP3 334 334 37.51     No significant similarity found  
Bunyavirales MN617082 RNA ssRNA(–) RdRp Botrytis cinerea negative-stranded RNA virus 6 (BcNSRV6) BCI11 BCI11_TRINITY_DN2250_c0_g1_i1 7,071 2,258 266.3 0.0 MK507779 R. solani bunya/phlebo-like virus 1 37.69
Mymonaviridae MN954878 RNA ssRNA(–) RdRp Botrytis cinerea negative-stranded RNA virus 7 (BcNSRV7) BCI2 BCI2_Contig7 10,352 1,953 223.07 0.0 MF444283 S. sclerotiorum negative-stranded RNA virus 5 99.14
HP1 300 33.92   No significant similarity found  
HP2 394 43.82   No significant similarity found  
HP3 318 36.19   No significant similarity found  
Mymonaviridae MT157412 RNA ssRNA(–) RdRp Botrytis cinerea negative-stranded RNA virus 7 isolate BCI7 BCI7 BCI7_Contig4 10,153 1,953 222.43   MF444283 S. sclerotiorum negative-stranded RNA virus 5 99.14
HP1 300 33.78 0.0 No significant similarity found  
HP2 394 43.78   No significant similarity found  
HP3 321 36.66   No significant similarity found  
Mymonaviridae MT157413 RNA ssRNA(–) RdRp Botrytis cinerea negative-stranded RNA virus 7 isolate BCS13 BCS13 BCS13_TRINITY_DN1_c0_g1_i1 10,002 1,953 222.23 0.0 MF444283 S. sclerotiorum negative-stranded RNA virus 5 99.15
HP1 300 33.69   No significant similarity found  
HP2 394 43.82   No significant similarity found  
HP3 321 36.51   No significant similarity found  
ssRNA negative-strand virus MT157408 RNA ssRNA(–) RdRp Botrytis cinerea negative-stranded RNA virus 8 (BcNSRV8) BCS16 BCS16_TRINITY_DN284_c0_g3_i1 10,220 3,385 395.55 0.0 LN827956 B. cinerea negative-stranded RNA virus 1 96.82
ssRNA negative-strand virus MT157409 RNA ssRNA(–) RdRp Botrytis cinerea negative-stranded RNA virus 9 (BcNSRV9) BCS8 BCS8_TRINITY_DN5169_c0_g1_i1 10,287 3,365 394.23 0.0 LN827956 B. cinerea negative-stranded RNA virus 1 68.87
ssRNA negative-strand virus MT157410 RNA ssRNA(–) RdRp Botrytis cinerea negative-stranded RNA virus 10 (BcNSRV10) BCS9 BCS9_TRINITY_DN4026_c0_g1_i1 10,312 3,408 399.04 0.0 LN827956 B. cinerea negative-stranded RNA virus 1 68.98
ssRNA negative-strand virus MT157411 RNA ssRNA(–) RdRp Botrytis cinerea negative-stranded RNA virus 11 (BcNSRV11) BCS17 BCS17_TRINITY_DN1732_c0_g3_i1 10,168 3,339 389.93 0.0 LN827956 B. cinerea negative-stranded RNA virus 1 98.34
ssRNA negative-strand virus MN617078 RNA ssRNA(–) RdRp Botrytis cinerea orthobunya-like virus 1 (BcOBV1) BCI9 BCI9_TRINITY_DN4209_c0_g1_i1 8,058 2,646 313.64 2E−12 JN968590 C. porteira virus 23.98
ssRNA negative-strand virus MT157407 RNA ssRNA(–) RdRp Botrytis cinerea orthobunya-like virus 1 isolate BCI5 BCI5 BCI5_TRINITY_DN26_c0_g1_i1 8,027 2,646 313.34 2.00E−12 JN968590 C. porteira orthobunyavirus 24.25
Genomoviridae MN625247 DNA ssDNA Rep Botrytis cinerea ssDNA virus 1 (BcssDV1) BCS11 BCS11_TRINITY_DN160_c0_g1_i2 1,694 321 36.62 8.00E–68 KY230625 Bemisia-associated genomovirus NfO 42.86
sRep 380 43.32 5.00E−72 KY230625 Bemisia-associated genomovirus NfO 42.86
a

ORF, open reading frame; RdRp, RNA-dependent RNA polymerase; HP, hypothetical protein; CP, coat protein; RaP, replication-associated protein; Rep, replication protein; sRep, spliced replication-associated protein.

b

“ssRNA(+)” and “ssRNA(+)” indicate positive- and negative-strand single-stranded RNAs, respectively.