Table 2.
KSI databases used to generate the KEA3 kinase-substrate libraries
| KSI database | Dataset | Version | KEA3 library name |
|---|---|---|---|
| PhosphoSitePlus (34) | Kinase-substrate | 30 July 2019 | PhosphoSitePlus |
| PhosD (65) | Predictions resulting from model trained on Phospho.ELM | 5 August 2019 | PhosD.ELM |
| PhosD (65) | Predictions resulting from model trained on PhosphoSitePlus | 9 August 2019 | PhosD.PSP |
| PhosD (65) | Predictions resulting from model trained on all KSINs | 10 August 2019 | PhosD.All |
| PhosphoNetworks (63) | rawKSI | 9 August 2019 | PhosphoNetworks.rawKSI |
| PhosphoNetworks (63) | comKSI | 9 August 2019 | PhosphoNetworks.comKSI |
| PhosphoNetworks (63) | refKSI | 9 August 2019 | PhosphoNetworks.refKSI |
| PTMsigDB (16) | Kinase signature subset of the Uniprot human dataset | 1.9.0 | PTMsigDB |
| Cheng et al. (52) | KSIN in Supplementary Table S1 | Static | Cheng.KSI |
| Phospho.ELM (64) | Vertebrate database dump | 9.0 | Phospho.ELM |