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. 2021 Jul 7;40:226. doi: 10.1186/s13046-021-01982-y

Table 1.

Top 30 up and downregulated genes in RANBP3L-deficient cells. Genes deregulated under isosmotic and hyperosmotic cell culture conditions are highlighted in bold

Top 30 upregulated genes Top 30 downregulated genes
300 mosmol/kg 600 mosmol/kg 300 mosmol/kg 600 mosmol/kg
Gene log2fold change Gene log2fold change Gene log2fold change Gene log2fold change
Pmp22 8.10 Unc5b 8.88 Hoxa9 −10.23 Zfp422 −9.10
Unc5b 7.56 Pmp22 7.65 Hoxa10 −9.91 Plagl1 −8.81
Tmem30b 7.35 Syt17 7.532 Epdr1 −9.39 Sh3gl2 −8.71
Syt17 6.84 Tmem30b 7.41 Hdgfrp3 −9.31 Hoxa10 −8.59
BC025446 6.19 Ica1 6.63 Zfp422 −9.28 Asb4 −8.44
Sparc 6.08 BC025446 6.55 Atp6v0e2 −8.80 Atp6v0e2 −8.44
Gnao1 5.85 Siglecg 6.47 Sh3gl2 −8.77 Galnt11 −8.38
Ica1 5.84 Gnao1 5.86 Phactr2 −8.64 Arrb1 −8.31
Lrrc32 5.66 Sparc 5.08 Eif5a2 −8.33 Hoxa9 −8.14
Gcnt3 5.55 Gcnt3 5.08 Galnt11 −7.95 Smoc1 −8.13
Acp5 5.51 Parvb 4.96 Inmt −7.84 Phactr2 −7.98
Col4a1 5.35 Parm1 4.91 Smoc1 −7.73 Inmt −7.86
Gstk1 5.32 Cntfr 4.85 Rnf217 −7.72 Epdr1 −7.80
Col4a2 5.20 Cbr1 4.84 Hebp2 −7.66 Aldh2 −7.57
Col4a3 5.15 Acp5 4.82 Aldh2 −7.49 Hdgfrp3 −7.57
Parm1 5.03 Col4a3 4.80 Ccdc91 −7.48 Ccdc91 −7.39
Siglecg 4.89 Parvg 4.77 Hoxd9 −7.46 Hebp2 −7.36
Itgb7 4.71 Sytl5 4.70 Hoxd8 −7.29 Neil3 −7.20
Gc 4.64 Mcpt8 4.63 Slc9a7 −7.26 Slc9a7 −7.14
Parvb 4.63 Gstk1 4.34 Sim1 −7.25 Adgra1 −7.08
Dmkn 4.62 Sftpd 4.24 Sipa1l2 −7.15 Sim1 −7.04
Cbr1 4.59 Myo7b 4.22 Bckdhb −7.05 Zfhx4 −7.03
Myo7b 4.55 Serpinb9b 4.16 Tspan13 −7.02 Nrk −7.00
Lrrc61 4.42 Dhrs9 4.16 Enox2 −6.96 Enox2 −6.99
Col4a4 4.36 Nid1 4.14 Asb4 −6.95 Kitl −6.90
Bgn 4.34 Col4a2 4.13 Hoxd10 −6.73 Hoxd9 −6.85
Trex2 4.28 Ociad2 4.11 Prdm5 −6.68 Tspan13 −6.77
Inhba 4.18 C130073F10Rik 4.07 Pdlim1 −6.68 Eif5a2 −6.75
H60c 4.13 Col4a1 4.05 Nrk −6.66 Hoxa7 −6.64
Glipr2 4.12 Lypd5 4.03 Hoxa7 −6.62 Sipa1l2 −6.61