Table 2.
Comparison to existing webservers
| Tool | Year created | Citationsa | Gene setsc | No. of speciesc | Method | Input data | Visualization | Availability |
|---|---|---|---|---|---|---|---|---|
| KOBAS | 2006 | 2566 | -GO | 5,944 | -ORA | -gene list | -cirFunMap | -webserver |
| -KEGG | -ensemble learning | -expression | -barplot | -Python program | ||||
| - +3 more | -bubble plot | |||||||
| WebGestalt | 2005 | 4146 | -GO | 12 | -ORA | -gene list | -barchart | -webserver |
| -KEGG | -FCS | -expression | -volcano plots | -R package | ||||
| - +20 more | -PT | -DAG | -API | |||||
| -GSEA plot | ||||||||
| -pathway view | ||||||||
| g:Profiler | 2007 | 2987 | -GO | 711 | -ORA | -gene list | -Manhattan plot | -webserver |
| -KEGG | -heatmap | -R package | ||||||
| - +7 more | -API | |||||||
| GeneTrail | 2007 | 413 | -GO | 12 | -ORA | -gene list | -interactive tables | -webserver |
| -KEGG | -FCS | -expression | -API | |||||
| - +64 more | -PT | |||||||
| DAVID | 2009 | 39510 | -GO | >65,000 | -ORA | -gene list | -GoCharts | -webserver |
| -KEGG | -KeggCharts | -program | ||||||
| - +38 more | -DomainCharts | -API | ||||||
| GOrilla | 2009 | 2710 | -GO | 8 | -ORA | -gene list | -DAG | -webserver |
| ToppGene | 2009 | 1846 | -GO | 2 | -ORA | -gene list | -barplot | -webserver |
| - +115 more | -API | |||||||
| agriGO | 2010 | 2934 | -GO | 45 | -ORA | -gene list | -barplot | -webserver |
| -FCS | -expression | -DAG | ||||||
| PANTHER | 2003 | 2368b | -GO | 142 | -ORA | -gene list | -pie chart | -webserver |
| - +6 more | -FCS | -expression | -bar chart | -API | ||||
| Enrichr | 2013 | 5867 | -GO | 6 | -ORA | -gene list | -barplot | -Webserver |
| -KEGG | -grid view | -API | ||||||
| -+167 more | -network | |||||||
| -clustergram | ||||||||
| -Enrichr Appyter |
aGoogle Scholar, April 2021. Citations to papers of server update or usage protocols were taken into statistics.
bCitations to usage protocols of gene function analysis using PANTHER were taken into statistics.
cThis information were summarized based on the online service of the webservers in April 2021.