Table 1.
Selected features for PMO | Selected features for 2OMe | ||||
---|---|---|---|---|---|
Name | Description | FIa | Name | Description | FIa |
ASO concentrationb | Concentration of oligomer used in the experiment | 0.64±0.14 | ASO concentrationb | Concentration of oligomer used in the experiment | 0.11±0.05 |
Exon v intron %GC after blocking by oligo | %GC in exon when blocked by oligo / %GC 5′ intron 200 bases upstream | 0.68±0.15 | GCs (number of) | Total GCs in ASO sequence | 0.67±0.20 |
dG (50BaseFlanksAroundTarget) | Predicted binding energy (21) of ASO to the target sequence plus 50-base flanks (13) | 0.66±0.16 | ACP | Distance in bases from the splice acceptor site to the center of the target site (17) | 0.49±0.21 |
ACC_LAST15 | Predicted accessibility scores (22) of the 3′ end of the target (last 15 bases) | 0.32±0.09 | %GC of exon when blocked by oligo | Total remaining %GCs of target exon sequence when blocked by ASOs | 0.46±0.11 |
niscore_per_base | Cumulative NI score (24) divided by the number of exon bases. | 0.18±0.09 | |||
ACC_LAST8 | Predicted accessibility scores of the 3′ end of the target (last 8 bases) | 0.12±0.07 |
aThe feature importance (FI) was calculated by the permutation importance method (23).
bThe ASO concentration used in the experiment is always included as one of the features of the predictive model.