TABLE 1.
Gene/cluster | Category |
Phytophthora infestans |
Verticillium dahliae |
||
---|---|---|---|---|---|
P | MI ratio | P | MI ratio | ||
Triglyceride lipase | Antibacterial protein | >0.05 | 1.09 | 2.19E–03 | 1.96 |
Unknown siderophore 1 | Siderophore | 2.61E–03 | 0.80 | 3.96E–04 | 1.78 |
Hrp1 | Type III secretion system | 2.88E–05 | 0.76 | 7.35E–04 | 1.74 |
Putative Rhs toxin | Antibacterial protein | 1.38E–04 | 0.74 | 3.16E–03 | 1.70 |
phzO | Antibiotic | 6.17E–03 | 1.15 | 1.49E–06 | 0.40 |
Pore-forming pyocin | Antibacterial protein | >0.05 | 0.88 | 2.10E–02 | 1.63 |
Type III secretion system | Type III secretion system | 1.56E–04 | 0.80 | 1.01E–02 | 1.54 |
HCN | Antibiotic | 1.79E–05 | 1.33 | 1.90E–03 | 0.60 |
PAA catabolism | Plant-bacterium interaction | 7.78E–05 | 1.28 | 8.26E–04 | 0.57 |
Tae4-like | Antibacterial protein | 3.37E–05 | 1.35 | 1.04E–02 | 0.65 |
Pyrrolnitrin | Antibiotic | 6.56E–03 | 1.16 | 1.12E–05 | 0.47 |
HPR | Antibiotic | 9.60E–03 | 1.15 | 3.37E–05 | 0.48 |
NRPS 9 | Orphan gene cluster | >0.05 | 1.13 | 4.42E–04 | 0.46 |
2,3-btd biosynthesis | Plant-bacterium interaction | 1.82E–03 | 1.24 | 1.17E–03 | 0.58 |
iaa biosynthesis | Plant-bacterium interaction | 1.86E–04 | 1.27 | 3.10E–03 | 0.61 |
phzH | Antibiotic | >0.05 | 1.16 | 1.45E–02 | 1.45 |
DUF4150/Tox-GHH2 | Antibacterial protein | 2.89E–04 | 1.25 | 8.14E–03 | 0.64 |
Achromobactin | Siderophore | 1.73E–04 | 1.26 | 1.15E–02 | 0.65 |
Tox-REase-5 | Antibacterial protein | 5.03E–04 | 1.29 | 2.64E–02 | 0.69 |
S-type pyocin (DNase) | Antibacterial protein | 5.34E–04 | 1.23 | 1.37E–02 | 0.66 |
NRPS-PKS 5 | Orphan gene cluster | >0.05 | 1.16 | 3.94E–02 | 1.40 |
SPI-1 (Inv/Mixi/Spa) | Type III secretion system | 2.72E–02 | 0.84 | >0.05 | 1.38 |
iaa catabolism | Plant-bacterium interaction | >0.05 | 0.97 | 6.74E–03 | 0.51 |
Rhs protein (nuclease) | Antibacterial protein | >0.05 | 0.93 | 3.41E–02 | 1.41 |
Acetoin catabolism | Plant-bacterium interaction | >0.05 | 0.96 | 5.99E–03 | 0.61 |
Viscosin | Cyclic lipopeptides | 3.10E–02 | 1.19 | >0.05 | 0.87 |
NRPS 2 | Orphan gene cluster | 4.28E–02 | 0.75 | >0.05 | 1.02 |
Nor | Denitrification cluster | 1.33E–02 | 1.16 | >0.05 | 0.97 |
Only phytobeneficial traits that significantly correlate (P < 0.05) with higher or lower pathogen inhibition in at least one of the two pathogens under study and are present in five Pseudomonas strains and more are presented. MI ratio, mean inhibition ratio.