Table 1.
Comparison of overexpressed genes between Beijing strains at 14 dpi
| A. Overexpressed genes of BL at 14 dpi | |||||
|---|---|---|---|---|---|
| Entrez ID | Name | Biotype | Description | Log FC | p-value |
| 17,739 | TrnP | tRNA | tRNA proline,mitochondrial | 0,66 | 0,0008 |
| 17,977 | Ncoa1 | Protein | Nuclear receptor coactivator | 0,44 | 0,0199 |
| 23,874 | Farsb | tRNA | Phenylalanyl-tRNA synthetase, beta subunit | 0,48 | 0,0077 |
| 55,936 | Ctps2 | Protein | Cytidine 5´-triphosphate synthase | 1,27 | 0,0000 |
| 56,632 | Sphk2 | Protein | Sphingosine kinase 2 | 0,88 | 0,0000 |
| 69,721 | Nkiras1 | Protein | NFKB inhibitor interactions | 0,46 | 0,0022 |
| 71,056 | 4933405E24Rik | ncRNA | Non coding RNA | 0,40 | 0,0077 |
| 74,453 | Cfap53 | Protein | Cilia and flagella associated protein 53 | 0,52 | 0,0004 |
| 75,138 | 4930526L06Rik | ncRNA | Non coding RNA | 0,84 | 0,0000 |
| 75,388 | Boll | Protein | Boule homolog, RNA binding protein | 0,52 | 0,0102 |
| 75,784 | Cfap299 | Protein | Cilia and flagella associated protein 299 | 0,55 | 0,0054 |
| 75,888 | 4930573H18Rik | ncRNA | RIKEN cDNA 4930573H18 | 0,74 | 0,0000 |
| 76,933 | Ifi27l2a | Protein | Interferon alpha-inducible protein 27 like 2A | 0,55 | 0,0004 |
| 330,401 | Tmcc1 | Protein | Transmembrane and coiled coil domains 1 | 0,43 | 0,0030 |
| 664,942 | Gm13858 | Predicted gene | Cancer susceptibility candidate 4 pseudogene | 0,48 | 0,0040 |
| 668,253 | Dleu2 | lncRNA | Long non coding RNA | 0,42 | 0,0069 |
| 100,504,464 | E230016K23Rik | lncRNA | Long non coding RNA | 0,72 | 0,0000 |
| 102,632,404 | Gm15396 | lncRNA | Long non coding RNA | 0,30 | 0,0062 |
| 102,635,296 | Gm32673 | lncRNA | Long non coding RNA | 0,60 | 0,0027 |
| 102,636,584 | Gm32673 | lncRNA | Long non coding RNA | 0,42 | 0,0061 |
| 108,167,382 | LOC108167382 | lncRNA | Long non coding RNA | 0,85 | 0,0093 |
| B. Overexpressed genes of Classical-Beijing at 14 dpi | |||||
| Entrez ID | Name | Biotype | Description | Log FC | p-value |
| 15,516 | Hsp90ab1 | Protein | Heat shock protein 90 alpha (cytosolic)2 C class B member 1 | 0,44 | 0,0172 |
| 16,468 | Jarid2 | Protein | Jumonji, AT rich interactive domain 2 | 0,64 | 0,0003 |
| 16,651 | Sspn | Protein | Sarcospan | 0,78 | 0,0000 |
| 21,577 | Tcrb | Protein | T cell receptor beta chain | 0,56 | 0,0001 |
| 27,204 | Syn3 | Protein | Synapsin III | 0,41 | 0,0042 |
| 27,660 | 1700088E04Rik | cDNA | RIKEN cDNA 1700088E04 gene | 0,40 | 0,0102 |
| 76,392 | Slfn5os | lncRNA | Schlafen 5 opposite strand | 0,46 | 0,0028 |
| 78,749 | Filip1 | Protein | Filamin A interacting protein 1-like | 0,68 | 0,0001 |
| 106,205 | Zc3h7a | Protein | Zinc finger CCCH type containing 7 | 0,65 | 0,0001 |
| 106,585 | Ankrd12 | Protein | Ankyrin repeat domain 12 | 0,48 | 0,0038 |
| 109,979 | Art3 | Protein | ADP -ribosyltransferase 3 | 0,37 | 0,0180 |
| 225,182 | Rbbp8 | Protein | Retinoblastoma binding protein | 0,88 | 0,0001 |
| 232,414 | Clec9a | Protein | C -type lectin domain family 9, member a | 0,45 | 0,0168 |
| 278,279 | Tmtc2 | Protein | Tansmembrane and tetratricopeptide repeat containing | 0,62 | 0,0008 |
| 319,371 | D030028A08Rik | lncRNA | Long non coding RNA | 0,37 | 0,0180 |
| 320,249 | D130009I18Rik | lncRNA | Long non coding RNA | 0,71 | 0,0000 |
| 667,373 | Ifit1bl1 | Protein | Interferon induced protein with tetratricopeptide repeats | 0,30 | 0,0066 |
| 101,056,014 | LOC101056014 | misc_RNA | Long non coding RNA | 0,47 | 0,0011 |
| 102,465,200 | Mir6381 | Micro RNA | Micro RNA 6381 | 0,44 | 0,0005 |
| 102,632,231 | LOC102632231 | lncRNA | Long non coding RNA | 0,49 | 0,0038 |
| 102,634,124 | Gm31785 | lncRNA | Long non coding RNA | 0,52 | 0,0003 |
| 102,635,265 | Gm32650 | lncRNA | Long non coding RNA | 0,42 | 0,0036 |
| 102,636,152 | Gm28068 | lncRNA | Long non coding RNA | 0,28 | 0,0151 |
| 102,639,821 | Gm36043 | lncRNA | Long non coding RNA | 0,46 | 0,0006 |
| 102,639,982 | LOC102639982 | lncRNA | Long non coding RNA | 0,41 | 0,0119 |
| 102,640,929 | Gm36876 | lncRNA | Long non coding RNA | 0,66 | 0,0002 |
| 105,243,537 | Gm39429 | lncRNA | Long non coding RNA | 0,57 | 0,0013 |
| 108,167,336 | 108,167,336 | lncRNA | Long non coding RNA | 0,52 | 0,0001 |
| 108,168,339 | 108,168,339 | lncRNA | Long non coding RNA | 0,69 | 0,0002 |