Table 2.
Reversible |
Covalent |
|||||||
---|---|---|---|---|---|---|---|---|
Type I |
Type II |
Type I |
Type II |
|||||
docking score (XP) | MM/GBSA dG Bind |
docking score (XP) | MM/GBSA dG Bind |
cdock affinity | MM/GBSA dG Bind |
cdock affinity | MM/GBSA dG Bind |
|
1 | −8.499 | −54.71 | −8.519 | −57.99 | −8.693 | −61.64 | −6.249 | −37.79 |
2 | −8.132 | −50.83 | −7.819 | −55.61 | −8.233 | −34.65 | −6.685 | −36.06 |
3 | – | – | −6.134 | −28.08 | −7.312 | −24.51 | −6.981 | 36.11 |
4 | −8.213 | −52.36 | −7.034 | −42.78 | −8.188 | −35.80 | −6.140 | −47.58 |
5 | −8.210 | −53.75 | −4.216 | −46.44 | −8.141 | −37.61 | −5.607 | −24.69 |
6 | −8.135 | −52.37 | −7.225 | −38.32 | −8.269 | −45.84 | −6.819 | −27.79 |
7 | −8.309 | −55.48 | −8.360 | −51.57 | −8.045 | −50.49 | −7.748 | 6.62 |
8 | −8.193 | −51.5 | −6.560 | −39.76 | −8.046 | −36.68 | −6.685 | −43.60 |
9 | −8.052 | −53.51 | −5.437 | −36.13 | −8.183 | −37.85 | −6.176 | −34.18 |
10 | −8.204 | −50.87 | −6.788 | −53,12 | −8.626 | −41.35 | −6.855 | −34.79 |
11 | −8.236 | −57.97 | −7.176 | −20.02 | −7.897 | −42.24 | −7.804 | 46.15 |
12 | −7.926 | −52.70 | −6.785 | −44.62 | −8.186 | −40.35 | −6.525 | −48.47 |
13 | −8.278 | −57.06 | −7.075 | −42.91 | −8.024 | −52.93 | −7.111 | −32.16 |
14 | −8.209 | −51.36 | – | – | −8.301 | −40.16 | −5.758 | −29.96 |
15 | −8.221 | −52.12 | −4.795 | −2.46 | −8.369 | −37.02 | −6.363 | −47.81 |
16 | −8.281 | −51.63 | −6.784 | −41.76 | −7.457 | −45.26 | −6.289 | −43.93 |
17 | −8.369 | −54.02 | – | – | −8.464 | −45.79 | −5.367 | −44.99 |
18 | −8.143 | −50.91 | −6.521 | −41.23 | −8.197 | −46.33 | −6.542 | −41.71 |
19 | −7.935 | −53.14 | −7.953 | −57.54 | −7.890 | −41.16 | −6.452 | −44.63 |
20 | −8.063 | −54.70 | −7.505 | −54.38 | −8.308 | −34.01 | −6.735 | −32.73 |
21 | −8.019 | −51.92 | −7.732 | −54.85 | −8.000 | −28.22 | −7.221 | −34.68 |
22 | −7.929 | −54.38 | −6.722 | −49.94 | −7.823 | −39.63 | −6.360 | −18.93 |
23 | −8.200 | −50.17 | −6.152 | −36.16 | −8.344 | −39.62 | −6.480 | −35.48 |
24 | −8.227 | −55.40 | −7.714 | −60.28 | −8.504 | −42.35 | −7.072 | −33.41 |
25 | −8.093 | −50.90 | −6.606 | −53.61 | −8.256 | −41.14 | −7.077 | −35.23 |
26 | −8.206 | −50.79 | −6.501 | −54.63 | −8.601 | −40.48 | −6.242 | −32.12 |
27 | −8.425 | −56.44 | −6.836 | −56.88 | −8.533 | −48.12 | −6.750 | −34.59 |
28 | −8.289 | −58.79 | −7.046 | −44.12 | −8.837 | −48.69 | −6.608 | −33.40 |
29 | −8.196 | −58.01 | −6.252 | −43.46 | −8.228 | −49.88 | −7.206 | −28.65 |
30 | −8.315 | −58.44 | −4.182 | −47.12 | −8.667 | −50.57 | −5.632 | −36.95 |
31 | −8.132 | −54.03 | −4.606 | −41.29 | −8.560 | −51.83 | −6.300 | −34.00 |
32 | −8.500 | −61.06 | −6.732 | −15.06 | −8.626 | −45.56 | −6.887 | 9.84 |
33 | −8.341 | −57.21 | −6.865 | −48.23 | −7.404 | −50.21 | −6.634 | −39.94 |
34 | −8.195 | −54.00 | −8.28 | −43.08 | −8.134 | −44.49 | −7.360 | −27.69 |
35 | – | – | – | – | – | – | – | – |
36 | −7.700 | −37.08 | −6.352 | −48.78 | −7.495 | −25.07 | −6.765 | −27.60 |
37 | – | – | – | – | –5.623 | –26.39 | –6.764 | –32.26 |
38 | – | – | – | – | –5.975 | 12.70 | – | – |
Calculated binding energies are provided for both, the reversible and covalent MIF-ligand complexes.