Table 1.
Calculation of the average distance travelled by rightward replication forks emanating from the IZ located in 5′ of DMDTet. The 5′ IZ was considered to be fully efficient. Replication fork velocity was assumed to be constant throughout S-phase. fS1, fS2, fS3 and fS4 replication timing values correspond to the percentage of BrdU-labelled DNA relative to total S-phase in S1, S2, S3 and S4 fractions, respectively, at the position of the 5′ IZ (data from Figure 1F in (46); average percentage from two independent experiments). vRF, velocity of rightward forks
Parameter | Value | Comments | |
---|---|---|---|
Doubling time | 552 min | Data from Supplementary Figure 1G in ref. (46) | |
% of cells in S phase | 69.4 | Data from Supplementary Figure 1H in ref. (46) | |
Estimated S-phase duration | 383 min | = % of cells in S phase*doubling time | |
Median velocity of rightward forks emanating from the IZ located in 5′ of DMDTet | 2.1 kb/min | vRF; see Supplementary Figure S1B | |
Theoretical distance travelled by rightward forks emanating from the IZ located in 5′ of DMDTet starting in | S1 | 804 kb | dS1 = 1*S-phase duration*vRF |
S2 | 603 kb | dS2 = 0.75*S-phase duration*vRF | |
S3 | 402 kb | dS3 = 0.5*S-phase duration*vRF | |
S4 | 201 kb | dS4 = 0.25*S-phase duration*vRF | |
% of rightward forks emanating from the IZ located in 5′ of DMDTet starting in | S1 | 2.2 | fS1; data from Figure 1F in ref. (46) |
S2 | 6.2 | fS2; data from Figure 1F in ref. (46) | |
S3 | 26.2 | fS3; data from Figure 1F in ref. (46) | |
S4 | 65.4 | fS4; data from Figure 1F in ref. (46) | |
Average distance travelled by rightward forks emanating from the IZ located in 5′ of DMDTet | 292 kb | = dS1*fS1+dS2*fS2+dS3*fS3+dS4*fS4 |