Table 3.
Differentially up-regulated circRNAs in serum exosomes of patients with sepsis.
| circRNA | Alias | P-value | FDR | FC (abs) | chrom | circRNA_type | best_transcript | GeneSymbol |
|---|---|---|---|---|---|---|---|---|
| hsa_circRNA_066869 | hsa_circ_0066869 | 0.022756307 | 0.431741635 | 1.5009586 | chr3 | Sense overlapping | NM_018266 | TMEM39A |
| hsa_circRNA_405661 | 0.039569341 | 0.431741635 | 1.6109265 | chr18 | Sense overlapping | NR_033354 | ZNF519 | |
| hsa_circRNA_001264 | hsa_circ_0000086 | 0.017699179 | 0.431741635 | 1.5018914 | chr1 | Antisense | NM_152996 | ST6GALNAC3 |
| hsa_circRNA_104400 | hsa_circ_0006944 | 0.043350982 | 0.431741635 | 1.7182999 | chr7 | Exonic | NM_001518 | GTF2I |
| hsa_circRNA_101167 | hsa_circ_0005916 | 0.024804956 | 0.431741635 | 1.9019977 | chr12 | Exonic | NM_012174 | FBXW8 |
| hsa_circRNA_407041 | 0.049595412 | 0.431741635 | 1.6179568 | chr8 | Sense overlapping | ENST00000518026 | MSR1 | |
| hsa_circRNA_014551 | hsa_circ_0014551 | 0.030830215 | 0.431741635 | 1.6101319 | chr1 | Exonic | NM_018489 | ASH1L |
| hsa_circRNA_407148 | 0.024995712 | 0.431741635 | 1.839682 | chr9 | Intergenic | |||
| hsa_circRNA_003101 | hsa_circ_0003101 | 0.042393826 | 0.431741635 | 1.6219639 | chr3 | Exonic | NM_173471 | SLC25A26 |
| hsa_circRNA_033572 | hsa_circ_0033572 | 0.007038362 | 0.431741635 | 1.8332939 | chr14 | Exonic | NM_138420 | AHNAK2 |
| hsa_circRNA_103389 | hsa_circ_0001309 | 0.026886598 | 0.431741635 | 1.7955397 | chr3 | Exonic | NM_003157 | NEK4 |
| hsa_circRNA_401068 | 0.049692498 | 0.431741635 | 1.5372069 | chr12 | Exonic | NM_032814 | RNFT2 | |
| hsa_circRNA_081594 | hsa_circ_0081594 | 0.033763521 | 0.431741635 | 1.5187091 | chr7 | Exonic | NM_016068 | FIS1 |
| hsa_circRNA_104030 | hsa_circ_0001564 | 0.026931184 | 0.431741635 | 1.5017159 | chr5 | Exonic | NM_001746 | CANX |
| hsa_circRNA_104283 | hsa_circ_0001667 | 0.027324991 | 0.431741635 | 1.7455824 | chr7 | Exonic | NM_017802 | DNAAF5 |
| hsa_circRNA_021708 | hsa_circ_0021708 | 0.035339271 | 0.431741635 | 1.5242451 | chr11 | Exonic | NM_003477 | PDHX |
| hsa_circRNA_103749 | hsa_circ_0005480 | 0.041431749 | 0.431741635 | 1.5968689 | chr4 | Exonic | NR_036614 | DCLK2 |
| hsa_circRNA_008026 | hsa_circ_0008026 | 0.025086019 | 0.431741635 | 1.5726361 | chr4 | Exonic | NM_001221 | CAMK2D |
| hsa_circRNA_101205 | hsa_circ_0006078 | 0.048933628 | 0.431741635 | 1.7621779 | chr12 | Exonic | NM_023928 | AACS |
| hsa_circRNA_007507 | hsa_circ_0007507 | 0.023237468 | 0.431741635 | 1.8572626 | chr5 | Exonic | NM_002890 | RASA1 |
| hsa_circRNA_103456 | hsa_circ_0067127 | 0.027006569 | 0.431741635 | 1.6842385 | chr3 | Exonic | NM_012190 | ALDH1L1 |
| hsa_circRNA_031720 | hsa_circ_0031720 | 0.04767514 | 0.431741635 | 1.5353758 | chr14 | Exonic | NM_006364 | SEC23A |
| hsa_circRNA_075166 | hsa_circ_0075166 | 0.025125707 | 0.431741635 | 1.5415749 | chr5 | Exonic | NM_022455 | NSD1 |
| hsa_circRNA_001781 | hsa_circ_0001781 | 0.048181011 | 0.431741635 | 1.9555457 | chr8 | Intronic | ENST00000517494 | CSGALNACT1 |
| hsa_circRNA_101969 | hsa_circ_0041821 | 0.011283402 | 0.431741635 | 1.6567011 | chr17 | Exonic | NM_032442 | NEURL4 |
| hsa_circRNA_000947 | hsa_circ_0000947 | 0.026960269 | 0.431741635 | 2.5782047 | chr19 | Sense overlapping | NM_031485 | GRWD1 |
| hsa_circRNA_405717 | 0.036722435 | 0.431741635 | 2.010568 | chr19 | Intronic | ENST00000301281 | UBXN6 | |
| hsa_circRNA_002292 | hsa_circ_0002292 | 0.047693181 | 0.431741635 | 1.6544175 | chr5 | Exonic | NM_153013 | NADK2 |
| hsa_circRNA_101704 | hsa_circ_0037858 | 0.045400879 | 0.431741635 | 2.1431944 | chr16 | Exonic | NM_004862 | LITAF |
| hsa_circRNA_001063 | hsa_circ_0001063 | 0.042758831 | 0.431741635 | 2.315292 | chr2 | Intergenic | ||
| hsa_circRNA_102509 | hsa_circ_0006446 | 0.034684944 | 0.431741635 | 2.2800739 | chr19 | Exonic | NM_015578 | LSM14A |
| hsa_circRNA_406583 | 0.045804491 | 0.431741635 | 1.6819656 | chr5 | Sense overlapping | NM_018140 | CEP72 | |
| hsa_circRNA_102062 | hsa_circ_0007990 | 0.023322108 | 0.431741635 | 1.5649695 | chr17 | Exonic | NM_033419 | PGAP3 |
| hsa_circRNA_405781 | 0.031827149 | 0.431741635 | 1.7484564 | chr19 | Intronic | ENST00000221419 | HNRNPL | |
| hsa_circRNA_000746 | hsa_circ_0000746 | 0.001572925 | 0.431741635 | 2.0290976 | chr17 | Antisense | NM_004475 | FLOT2 |
| hsa_circRNA_000435 | hsa_circ_0000435 | 0.022928053 | 0.431741635 | 1.5484743 | chr12 | Intronic | ENST00000549893 | C12orf75 |
| hsa_circRNA_001714 | hsa_circ_0001714 | 0.010198598 | 0.431741635 | 5.0265939 | chr7 | Exonic | NM_032408 | BAZ1B |
| hsa_circRNA_040206 | hsa_circ_0040206 | 0.036836602 | 0.431741635 | 1.5041225 | chr16 | Exonic | NM_007242 | DDX19B |
| hsa_circRNA_001226 | hsa_circ_0001226 | 0.002126463 | 0.431741635 | 2.3072386 | chr22 | Antisense | NM_002473 | MYH9 |
| hsa_circRNA_000134 | hsa_circ_0000134 | 0.049036785 | 0.431741635 | 1.7256715 | chr1 | Antisense | NM_000565 | IL6R |
| hsa_circRNA_087800 | hsa_circ_0087800 | 0.043563969 | 0.431741635 | 1.6403757 | chr9 | Exonic | NM_018376 | NIPSNAP3B |
| hsa_circRNA_400101 | hsa_circ_0092328 | 0.037702213 | 0.431741635 | 1.8812764 | chr9 | Intronic | ENST00000315731 | RPL7A |
| hsa_circRNA_001308 | hsa_circ_0001308 | 0.013850614 | 0.431741635 | 3.3527247 | chr3 | Exonic | NM_003157 | NEK4 |
| hsa_circRNA_100659 | hsa_circ_0003168 | 0.049793865 | 0.431741635 | 1.5291681 | chr10 | Exonic | NM_144588 | ZFYVE27 |
| hsa_circRNA_404449 | 0.023726017 | 0.431741635 | 1.8863782 | chr1 | Exonic | NM_032409 | PINK1 | |
| hsa_circRNA_102774 | hsa_circ_0055412 | 0.044551823 | 0.431741635 | 1.5443449 | chr2 | Exonic | NM_001747 | CAPG |
| hsa_circRNA_102446 | hsa_circ_0049356 | 0.017117814 | 0.431741635 | 1.8012178 | chr19 | Exonic | NM_199141 | CARM1 |
| hsa_circRNA_403556 | 0.00783705 | 0.431741635 | 2.0363025 | chr6 | Exonic | uc010jpp.1 | LINC00340 | |
| hsa_circRNA_000230 | hsa_circ_0000765 | 0.019997256 | 0.431741635 | 1.7827514 | chr17 | Intronic | ENST00000225916 | KAT2A |
| hsa_circRNA_007326 | hsa_circ_0007326 | 0.046543498 | 0.431741635 | 1.9909955 | chr14 | Exonic | NM_014169 | CHMP4A |
| hsa_circRNA_404807 | 0.02819908 | 0.431741635 | 2.5888983 | chr10 | Exonic | NM_020682 | AS3MT | |
| hsa_circRNA_001389 | hsa_circ_0000729 | 0.027885902 | 0.431741635 | 1.5995622 | chr16 | Intronic | ENST00000268699 | GAS8 |
| hsa_circRNA_404818 | 0.048809072 | 0.431741635 | 2.0947754 | chr10 | Exonic | NM_000274 | OAT | |
| hsa_circRNA_001547 | hsa_circ_0001874 | 0.034742413 | 0.431741635 | 2.1924449 | chr9 | Intronic | ENST00000356884 | BICD2 |
| hsa_circRNA_001241 | hsa_circ_0000508 | 0.029378216 | 0.431741635 | 2.0517604 | chr13 | Intronic | ENST00000326335 | CUL4A |
| hsa_circRNA_104671 | hsa_circ_0001819 | 0.043208655 | 0.431741635 | 1.8112929 | chr8 | Exonic | NM_015902 | UBR5 |
| hsa_circRNA_102442 | hsa_circ_0049271 | 0.044592332 | 0.431741635 | 2.611047 | chr19 | Exonic | NM_012289 | KEAP1 |
| hsa_circRNA_003907 | hsa_circ_0003907 | 0.038311645 | 0.431741635 | 1.833842 | chr13 | Intronic | ENST00000319562 | FARP1 |
| hsa_circRNA_038516 | hsa_circ_0038516 | 0.039811555 | 0.431741635 | 1.7176617 | chr16 | Exonic | NM_018119 | POLR3E |
| hsa_circRNA_405872 | 0.031980564 | 0.431741635 | 1.6275643 | chr2 | Exonic | uc002ruu.3 | PRKCE | |
| hsa_circRNA_101458 | hsa_circ_0034044 | 0.021127405 | 0.431741635 | 1.7423746 | chr15 | Exonic | uc001ytg.3 | HERC2P3 |
| hsa_circRNA_405443 | 0.003224918 | 0.431741635 | 2.1653199 | chr16 | Intronic | ENST00000342673 | NDE1 | |
| hsa_circRNA_004077 | hsa_circ_0004077 | 0.037688065 | 0.431741635 | 4.1270503 | chr16 | Exonic | NM_020927 | VAT1L |
| hsa_circRNA_103852 | hsa_circ_0072665 | 0.013650168 | 0.431741635 | 2.2677625 | chr5 | Exonic | NM_197941 | ADAMTS6 |
| hsa_circRNA_023461 | hsa_circ_0023461 | 0.000918303 | 0.431741635 | 2.3023746 | chr11 | Exonic | NM_015242 | ARAP1 |
| hsa_circRNA_103864 | hsa_circ_0005730 | 0.027626518 | 0.431741635 | 2.7818978 | chr5 | Exonic | NM_001799 | CDK7 |
| hsa_circRNA_001653 | hsa_circ_0001568 | 0.016902603 | 0.431741635 | 6.1554028 | chr6 | Intronic | ENST00000344450 | DUSP22 |
| hsa_circRNA_001405 | hsa_circ_0001167 | 0.042757718 | 0.431741635 | 2.7907614 | chr20 | Intronic | ENST00000371941 | PREX1 |
| hsa_circRNA_043943 | hsa_circ_0043943 | 0.017629978 | 0.431741635 | 1.9805323 | chr17 | Exonic | uc010cyw.1 | VAT1 |
| hsa_circRNA_045799 | hsa_circ_0045799 | 0.027973896 | 0.431741635 | 1.7012317 | chr17 | Exonic | NM_022066 | UBE2O |
| hsa_circRNA_406295 | 0.039669886 | 0.431741635 | 1.5046538 | chr3 | Sense overlapping | NR_109992 | SUCLG2-AS1 | |
| hsa_circRNA_104484 | hsa_circ_0082326 | 0.035552427 | 0.431741635 | 4.3097053 | chr7 | Exonic | NM_016478 | ZC3HC1 |
| hsa_circRNA_100329 | hsa_circ_0006352 | 0.04670856 | 0.431741635 | 1.598139 | chr1 | Exonic | NM_012432 | SETDB1 |
| hsa_circRNA_007771 | hsa_circ_0007771 | 0.028286903 | 0.431741635 | 1.6641182 | chr6 | Exonic | NM_032832 | LRP11 |
| hsa_circRNA_101491 | hsa_circ_0034762 | 0.039240976 | 0.431741635 | 4.4110245 | chr15 | Exonic | NM_014994 | MAPKBP1 |
| hsa_circRNA_020622 | hsa_circ_0020622 | 0.035376567 | 0.431741635 | 1.6406534 | chr11 | Exonic | NM_006435 | IFITM2 |
| hsa_circRNA_102481 | hsa_circ_0003253 | 0.016603437 | 0.431741635 | 1.7146811 | chr19 | Exonic | NM_014173 | BABAM1 |
| hsa_circRNA_103444 | hsa_circ_0008797 | 0.028562586 | 0.431741635 | 2.5886681 | chr3 | Exonic | NM_002093 | GSK3B |
| hsa_circRNA_104670 | hsa_circ_0001818 | 0.021625832 | 0.431741635 | 3.9778781 | chr8 | Exonic | NM_015902 | UBR5 |
| hsa_circRNA_406126 | 0.023124964 | 0.431741635 | 1.757962 | chr20 | Intronic | ENST00000244070 | PPP4R1L | |
| hsa_circRNA_000911 | hsa_circ_0001184 | 0.023141682 | 0.431741635 | 1.5147777 | chr21 | Intronic | ENST00000290219 | IFNGR2 |
FDR: false discover rate; FC: fold change.