TABLE 5.
Number of cis-elements | Upregulated TFs in drought stressed soybean1 | |||||||
TF family | GmOLPa | GmOLPa-like | GmOLPb | P21 | P21-like | Le et al., 2012 | Chen et al., 2016 | Belamkar et al., 2014 |
AP2 | 8 | 3 | 17 | 19 | 35 | |||
AP2; B3 | 7 | 12 | 3 | 8 | 10 | |||
AT-Hook | 135 | 93 | 143 | 67 | 74 | 1 | ||
bHLH | 9 | 9 | 3 | 5 | 5 | 9 | 50 | 24 |
bZIP | 13 | 27 | 23 | 33 | 21 | 9 | 32 | 9 |
C2H2 | 8 | 2 | 13 | 8 | 17 | 6 | 20 | 10 |
bZIP; homeodomain; HD-ZIP | 2 | 4 | 2 | 2 | 3 | |||
EIN3 | 6 | 5 | 3 | 8 | 11 | 2 | 2 | |
GATA | 22 | 6 | 2 | 7 | 5 | 11 | 2 | |
Sox | 2 | 2 | 2 | 1 | ||||
Homeodomain | 59 | 58 | 79 | 70 | 54 | 2 | 20 | 7 |
MADF | 6 | 2 | 13 | 12 | 14 | 1 | ||
MADS box | 9 | 6 | 4 | 12 | 8 | 1 | 4 | 3 |
Myb/SANT | 53 | 40 | 48 | 55 | 37 | 27 | 89 | 28 |
NAC; NAM | 20 | 22 | 14 | 10 | 14 | 30 | 54 | 10 |
SBP | 35 | 52 | 1 | 14 | 1 | 1 | ||
TBP | 25 | 47 | 83 | 40 | 25 | 4 | ||
TCP | 1 | 1 | 1 | 6 | 2 | 3 | 1 | |
TCR | 12 | 7 | 40 | 12 | 10 | |||
WRKY | 21 | 34 | 1 | 2 | 2 | 39 | 56 | 6 |
CG-1 | 2 | 6 | 2 | |||||
GRAS | 2 | 13 | 5 | |||||
B3 | 1 | 2 | 6 | |||||
Motif sequence only | 82 | 96 | 75 | 99 | 68 | - | - | - |
Others | 1 | 1 | 1 | 1 | - | - | - |
1Available expression data with gene function annotation. Number of TFs upregulated genes according to each study.