Table 2.

GWAS analysis results. For each trait, the table reports MTAs with their corresponding Chromosome and SNP position, the minor allele frequency (MAF) at the marker, and the effect estimated by the model (in trait units). MTAs all correspond to an FDR adjusted p value for multiple testing lower than 5%

Trait	Chromosome	SNP Position	MAF	Effect
PH	5	35,949,582	0.09	-9.65
	5	40,102,196	0.19	7.89
LN	16	1,030,350	0.08	1.10
SP	8	22,443,560	0.18	0.21
	6	43,445,565	0.22	-0.16
SL	8	31,615,399	0.18	0.10
	13	26,298,111	0.08	-0.13
SW	11	11,145,652	0.10	0.15
	4	10,506,174	0.04	-0.11
SLWR	6	43,587,035	0.31	0.01
	5	44,088,380	0.08	-0.01
RGB	1	54,112,377	0.12	3.14
	8	37,217,368	0.03	-4.89