Table 1.
Definition of systems in the MD simulations.
System | Description | Initial Structural Data: pdb |
---|---|---|
APO-1 | ϕ-head bound with initially | head: 4LNU [16] |
unperturbed α/β-tubulin | tubulin: 1JFF [27] | |
APO-2 | ϕ-head bound with α/β-tubulin determined from | 4LNU [16] |
X-ray crystallography | ||
ADP-1 | ADP-head bound with α/β-tubulin having conformational changes |
head: 1BG2 [26] tubulin: simulation for APO-1 |
ADP-2 | ADP-head bound with | head: 1BG2 [26] |
unperturbed α/β-tubulin | tubulin: 1JFF [27] | |
α/β-tubulin | isolated unperturbed α/β-tubulin | 1JFF [27] |