Table 1.
Main characteristics of the 52 satDNAs constituting the satellitome of C. gigas.
| satDNA | Monomer Length (bp) | % of the Genome (Average) | % of the Satellitome | % AT | Repbase |
|---|---|---|---|---|---|
| CgiSat01a | 164 | 0.72 | 11.29 | 59.8 | DNA/Helitron |
| CgiSat01b | 166 | 0.57 | 9.04 | 57.2 | DNA/Helitron |
| CgiSat02 | 437 | 0.44 | 6.91 | 65.7 | DNA/Helitron |
| CgiSat03 | 437 | 0.38 | 6.00 | 67.5 | DNA/Helitron |
| CgiSat04 | 2077 | 0.34 | 5.32 | 67.3 | DNA/Helitron |
| CgiSat05 | 811 | 0.38 | 6.00 | 67.6 | DNA/Helitron |
| CgiSat06 | 622 | 0.33 | 5.13 | 67.4 | DNA/Helitron |
| CgiSat07 | 2091 | 0.21 | 3.24 | 67.0 | DNA/Helitron |
| CgiSat08 | 166 | 0.19 | 2.96 | 67.5 | DNA/Helitron |
| CgiSat09 | 166 | 0.15 | 2.33 | 63.3 | DNA/Helitron |
| CgiSat10 | 433 | 0.14 | 2.26 | 63.0 | DNA/Helitron |
| CgiSat11 | 892 | 0.14 | 2.21 | 64.6 | LTR/BEL |
| CgiSat12 | 446 | 0.11 | 1.78 | 64.8 | - |
| CgiSat13 | 2414 | 0.11 | 1.74 | 67.4 | DNA/Kolobok |
| CgiSat14 | 1144 | 0.11 | 1.74 | 68.9 | DNA/Helitron |
| CgiSat15 | 177 | 0.08 | 1.32 | 68.9 | - |
| CgiSat16 | 2414 | 0.07 | 1.12 | 66.8 | DNA/Kolobok |
| CgiSat17 | 134 | 0.06 | 0.92 | 76.1 | DNA/Helitron |
| CgiSat18 | 731 | 0.05 | 0.86 | 63.9 | Interspersed Repeat |
| CgiSat19 | 212 | 0.04 | 0.60 | 72.6 | - |
| CgiSat20 | 662 | 0.05 | 0.81 | 65.4 | - |
| CgiSat21 | 441 | 0.05 | 0.77 | 69.2 | DNA/Helitron |
| CgiSat22 | 743 | 0.04 | 0.66 | 53.3 | LTR/Gypsy |
| CgiSat23 | 1295 | 0.04 | 0.60 | 64.9 | DNA/MuDR |
| CgiSat24 | 66 | 0.04 | 0.58 | 57.6 | - |
| CgiSat25 | 88 | 0.03 | 0.49 | 61.4 | NonLTR/R1 |
| CgiSat26 | 1894 | 0.02 | 0.30 | 60.4 | LTR/Gypsy |
| CgiSat27 | 99 | 0.02 | 0.26 | 60.6 | - |
| CgiSat28 | 182 | 0.02 | 0.25 | 44.0 | DNA/MuDR |
| CgiSat29 | 344 | 0.01 | 0.23 | 52.9 | DNA/DNA4-44 |
| CgiSat30 | 48 | 0.01 | 0.22 | 68.7 | - |
| CgiSat31 | 393 | 0.01 | 0.18 | 52.2 | IntegratedVirus/DNAV |
| CgiSat32 | 536 | 0.01 | 0.17 | 66.6 | DNA/Mariner |
| CgiSat33 | 105 | 0.05 | 0.80 | 46.7 | - |
| CgiSat34 | 1423 | 0.04 | 0.57 | 67.3 | DNA/DNA3-8 |
| CgiSat35 | 690 | 0.02 | 0.32 | 68.8 | DNA/IS3EU |
| CgiSat36 | 45 | 0.01 | 0.16 | 60.0 | - |
| CgiSat37 | 177 | 0.34 | 5.37 | 56.5 | DNA/Helitron |
| CgiSat38 | 3287 | 0.10 | 1.58 | 68.0 | DNA/DNA2-7 |
| CgiSat39 | 179 | 0.05 | 0.82 | 52.0 | - |
| CgiSat40 | 673 | 0.04 | 0.65 | 62.9 | DNA/Crypton |
| CgiSat41 | 1736 | 0.02 | 0.24 | 66.5 | DNA/Ginger1 |
| CgiSat42 | 930 | 0.03 | 0.52 | 66.9 | DNA/DNA4-31 |
| CgiSat43 | 21 | 0.01 | 0.16 | 66.7 | - |
| CgiSat44 | 748 | 0.01 | 0.16 | 68.6 | LTR/DIRS |
| CgiSat45 | 1576 | 0.08 | 1.31 | 64.1 | DNA/DNA4-2 |
| CgiSat46 | 149 | 0.03 | 0.41 | 54.4 | - |
| CgiSat47 | 129 | 0.02 | 0.30 | 69.8 | DNA/IS3EU |
| CgiSat48 | 2056 | 0.40 | 6.32 | 64.8 | DNA/Helitron |
| CgiSat49 | 1084 | 0.04 | 0.57 | 69.4 | DNA/DNA2-12 |
| CgiSat50 | 2078 | 0.02 | 0.33 | 64.1 | - |
| CgiSat51 | 396 | 0.01 | 0.19 | 63.1 | LTR/Gypsy |
| CgiSat52 | 1656 | 0.06 | 0.92 | 61.5 | DNA/Polinton |