FIG 5.

Protein-encoding gene functions for subalignments with high AMR prediction accuracies. Each panel includes predictive subalignments with AUCs of >0.8 after clustering the strains at a given k-mer similarity threshold. Points represent each subalignment, and they are plotted based on the corresponding position on the reference chromosome. Subalignments are colored according to hits for AMR (green), virulence (blue), and transporter genes (orange), respectively. If a subalignment contains multiple gene categories, the color will appear as a mixture. Subalignments that do not produce hits in any of the known AMR-related genes are colored in pink. Results for high-scoring subalignments at other clustering thresholds are shown in Fig. S8 in the supplemental material.