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. 2021 Jun 8;6(3):e00358-21. doi: 10.1128/mSystems.00358-21

TABLE 3.

Differentially expressed genes related to nitrate reduction, chemotaxis, and motility in the binned genomes

Function Gene product (KEGG ortholog)
Burkolderiales Bin13 Sedimenticola Bin14 Oceanospirillales Bin18 Aestuariibacter Bin44 Azoarcus Bin54 Aestuariibacter Bin60
Nitrate reduction Nitrate reductase/nitrite oxidoreductase, alpha and beta subunit (K03070, K03071);
nitrate reductase molybdenum cofactor assembly chaperone (K00373);
nitrate reductase gamma subunit (K00374)		 Nitrate/nitrite transporter (K02575, K02576);
nitrate reductase/nitrite oxidoreductase, beta subunit (K03071)		 Periplasmic nitrate reductase NapA (K2567) Nitrite reductase large subunit (K00362);
nitrate reductase/nitrite oxidoreductase, alpha and beta subunit (K03070, K03071);
nitrate reductase catalytic subunit (K00372);
nitrate reductase molybdenum cofactor assembly chaperone (K00373);
nitrate reductase gamma subunit (K00374);
nitrate/nitrite transporter (K02575)		 Periplasmic nitrate reductase NapA(K2567);
nitrate reductase/nitrite oxidoreductase, beta subunit (K03071);
nitrate reductase molybdenum cofactor assembly chaperone (K00373)		 Nitrate reductase/nitrite oxidoreductase, alpha and beta subunit (K03070, K03071);
nitrate reductase molybdenum cofactor assembly chaperone (K00373);
nitrate reductase gamma subunit (K00374);
nitrate/nitrite transporter (K02575)
Chemotaxis Not recovered Recovered but not differentially expressed Chemotaxis methyltransferase CheR (K00575);
chemotaxis glutaminase (K2390);
methyl-accepting chemotaxis protein (K03406);
chemotaxis sensor kinase CheA (K03407);
chemotaxis protein CheVY (K03415, K03413);
chemotaxis pili protein ChpABC (K06596, K06597, K06598)		 Not recovered Methyl-accepting chemotaxis protein (K03406);
chemotaxis sensor kinase CheA (K03407);
chemotaxis glutaminase (K2390);
chemotaxis protein CheWYV (K03408, K03413, K03415)		 Chemotaxis methyltransferase CheR (K00575);
chemotaxis glutaminase (K2390);
chemotaxis protein MotB (K02557);
methyl-accepting chemotaxis protein (K03406);
chemotaxis sensor kinase CheA (K03407);
purine-binding protein CheW (K3408);
chemotaxis protein CheD (K3411)
Motility Flagellin (K02406) Recovered but not differentially expressed Hook-associated protein 123 (K02396, K02407, K02397);
biosynthesis protein FlgF (K02404);
flagellin (K02406);
flagellar protein FliL (K02415);
biosynthesis protein FlhG (K04562)		 Flagellin (K02406);
hook-associated protein 2 (K02407);
flagellar protein FlaG (K06603);
flagellar protein FliS (K02422)		 Basal-body rod protein FlgBD (K02387, K02389);
biosynthesis protein FlgN (K02399);
flagellin (K02406);
hook-associated protein 2 (K02407);
flagellar protein FlaG (K06603);
flagellar brake protein (K21087)		 Biosynthesis protein FlhAF (K02400, K02404);
M-ring protein FliF (K02409);
flagellum ATP synthase (K02412);
hook-length control FliK (K02414);
flagellar motor switch protein FliMN (K02416, K02417);
biosynthesis protein FlhG (K04562)