Table 1. Estimates of average ± Standard Deviation (SD) for five decision metrics derived from ten replicates of 10-fold cross-validation results created by 10 Genomic Prediction (GP) methods.
GP method | Sensitivity | Specificity | Precision | Decision accuracy | AUC |
---|---|---|---|---|---|
RR | 0.86±0.03 | 0.83±0.02 | 0.89±0.02 | 0.85±0.01 | 0.76±0.05 |
BGLR | 0.66±0.03 | 0.83±0.03 | 0.86±0.02 | 0.75±0.02 | 0.94±0.00 |
LR | 0.51±0.06 | 0.5±0.06 | 0.51±0.07 | 0.50±0.05 | 0.51±0.04 |
PLR | 0.86±0.04 | 0.88±0.05 | 0.89±0.05 | 0.87±0.03 | 0.97±0.02 |
ANN | 0.91±0.03 | 0.90±0.03 | 0.90±0.04 | 0.90±0.02 | 0.99±0.02 |
RF | 0.98±0.02 | 0.93±0.02 | 0.94±0.02 | 0.96±0.01 | 1.00±0.01 |
GBM | 0.99±0.05 | 0.89±0.04 | 0.89±0.04 | 0.91±0.04 | 1.00±0.02 |
SVM | 0.61±0.06 | 0.97±0.04 | 0.99±0.02 | 0.67±0.05 | 0.94±0.04 |
NB | 0.94±0.03 | 0.74±0.06 | 0.78±0.06 | 0.84±0.04 | 0.91±0.04 |
KNN | 0.79±0.06 | 0.83±0.06 | 0.83±0.05 | 0.81±0.03 | 0.47±0.06 |